Detailed information of TA system TA131288

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 2842047..2842687
• Replicon: chromosome
• Accession: NZ_CP041821
• Organism: Mycobacterium tuberculosis strain 4-0062P6C4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ08
• Locus tag: FPJ88_RS13185
• Protein ID: WP_003412970.1
• Coordinates: 2842047..2842466 (-)
• Length: 140 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ09
• Locus tag: FPJ88_RS13190
• Protein ID: WP_003412975.1
• Coordinates: 2842463..2842687 (-)
• Length: 75 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FPJ88_RS13155	2837637..2838359	-	723	WP_003412957.1	DUF1906 domain-containing protein	-
FPJ88_RS13160	2838876..2839098	+	223	Protein_2597	type II toxin-antitoxin system VapB family antitoxin	-
FPJ88_RS13165	2839095..2839496	+	402	WP_003412963.1	PIN domain-containing protein	-
FPJ88_RS13170	2839531..2840451	-	921	WP_003902293.1	restriction endonuclease	-
FPJ88_RS13175	2840792..2841037	-	246	WP_071854223.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
FPJ88_RS13180	2841096..2842046	+	951	WP_003911916.1	Lsr2 family protein	-
FPJ88_RS13185	2842047..2842466	-	420	WP_003412970.1	type II toxin-antitoxin system VapC family toxin	Toxin
FPJ88_RS13190	2842463..2842687	-	225	WP_003412975.1	antitoxin VapB39	Antitoxin
FPJ88_RS13195	2842718..2845561	-	2844	WP_003899363.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
FPJ88_RS13200	2845633..2846034	-	402	WP_003412981.1	hypothetical protein	-
FPJ88_RS13205	2846034..2846504	-	471	WP_003899364.1	transcription antitermination factor NusB	-
FPJ88_RS13210	2846507..2847070	-	564	WP_003412989.1	elongation factor P	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (4-128)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 140 a.a.
• Molecular weight: 14732.70 Da
• Isoelectric Point: 6.7519

>T131288 WP_003412970.1 NZ_CP041821:c2842466-2842047 [Mycobacterium tuberculosis]
VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPAIAIAQLAAMTSLAGHTF
WPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTFDAALADSASAGLVEVL

Nucleotide

• Length: 420 bp

>T131288 NZ_CP041821:c2842466-2842047 [Mycobacterium tuberculosis]
GTGACGGCACTGCTCGATGTCAATGTGCTGATCGCGCTGGGCTGGCCGAATCACGTTCACCATGCGGCCGCGCAGCGATG
GTTCACGCAGTTCTCCTCGAATGGGTGGGCCACCACGCCGATCACCGAGGCAGGGTATGTCCGAATTTCAAGCAATCGCA
GTGTGATGCAGGTGTCGACCACGCCGGCTATCGCGATCGCTCAGTTGGCGGCGATGACTTCTCTTGCCGGGCACACGTTT
TGGCCTGACGATGTGCCACTGATCGTTGGGAGCGCCGGCGATCGCGATGCGGTGTCCAACCACCGTCGGGTCACCGACTG
CCATCTCATCGCCTTGGCCGCGCGCTACGGGGGCCGGTTGGTCACATTCGATGCCGCACTGGCCGATTCAGCATCCGCAG
GCCTCGTCGAGGTGTTGTAG

Antitoxin

Protein

• Length: 75 a.a.
• Molecular weight: 7993.94 Da
• Isoelectric Point: 4.0057

>AT131288 WP_003412975.1 NZ_CP041821:c2842687-2842463 [Mycobacterium tuberculosis]
MRTTLQIDDDVLEDARSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPTVTSEDVVRALEDDV

Nucleotide

• Length: 225 bp

>AT131288 NZ_CP041821:c2842687-2842463 [Mycobacterium tuberculosis]
ATGCGCACCACGTTGCAGATTGATGATGATGTTCTAGAAGATGCTCGTAGCATCGCGCGGTCGGAGGGCAAGTCAGTCGG
CGCGGTAATTTCTGAGTTGGCGCGTAGGTCGCTCCGTCCGGTTGGGATTGTCGAGGTTGACGGATTTCCGGTTTTTGATG
TTCCGCCGGATGCGCCGACGGTGACTTCCGAGGATGTCGTCCGCGCGCTCGAGGACGACGTGTGA

Structures

Toxin

• AlphaFold DB: G0TQ08

Antitoxin

• AlphaFold DB: G0TQ09