Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/MazF(toxin)
Location 3103565..3104135 Replicon chromosome
Accession NZ_CP041817
Organism Mycobacterium tuberculosis strain 4-0096P6C4

Toxin (Protein)


Gene name mazF Uniprot ID P71650
Locus tag FPJ92_RS14620 Protein ID WP_003414166.1
Coordinates 3103565..3103921 (-) Length 119 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID P0CL61
Locus tag FPJ92_RS14625 Protein ID WP_003901465.1
Coordinates 3103905..3104135 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ92_RS14600 3099017..3100705 - 1689 WP_003414155.1 alpha/beta hydrolase family protein -
FPJ92_RS14605 3100709..3101035 - 327 WP_003414157.1 hypothetical protein -
FPJ92_RS14610 3101208..3101795 + 588 WP_003914429.1 DUF3558 family protein -
FPJ92_RS14615 3101814..3103463 + 1650 WP_003899485.1 CocE/NonD family hydrolase -
FPJ92_RS14620 3103565..3103921 - 357 WP_003414166.1 type II toxin-antitoxin system toxin endoribonuclease MazF9 Toxin
FPJ92_RS14625 3103905..3104135 - 231 WP_003901465.1 antitoxin MazE Antitoxin
FPJ92_RS14630 3104178..3105221 - 1044 WP_003414172.1 DUF2293 domain-containing protein -
FPJ92_RS14635 3105412..3105687 + 276 WP_003911993.1 DUF1778 domain-containing protein -
FPJ92_RS14640 3105863..3106117 - 255 WP_003917684.1 hypothetical protein -
FPJ92_RS14645 3106265..3106669 + 405 WP_003414181.1 hypothetical protein -
FPJ92_RS14650 3106666..3106857 + 192 WP_003414184.1 hypothetical protein -
FPJ92_RS14655 3106921..3108210 + 1290 Protein_2892 transposase family protein -
FPJ92_RS14660 3108444..3108701 + 258 WP_003899489.1 hypothetical protein -
FPJ92_RS14665 3108806..3109117 + 312 WP_003414190.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(3-113)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-29)


Sequences

Toxin        


Download         Length: 119 a.a.        Molecular weight: 12858.73 Da        Isoelectric Point: 9.1962

>T131053 WP_003414166.1 NZ_CP041817:c3103921-3103565 [Mycobacterium tuberculosis]
VMRRGEIWQVDLDPARGSEANNQRPAVVVSNDRANATATRLGRGVITVVPVTSNIAKVYPFQVLLSATTTGLQVDCKAQA
EQIRSIATERLLRPIGRVSAAELAQLDEALKLHLDLWS

Download         Length: 357 bp

>T131053 NZ_CP041817:c3103921-3103565 [Mycobacterium tuberculosis]
GTGATGCGCCGCGGTGAGATTTGGCAGGTCGATCTCGACCCCGCTCGAGGTAGCGAAGCGAACAACCAGCGCCCCGCCGT
CGTCGTCAGCAACGACCGGGCCAACGCGACCGCCACGCGTCTTGGGCGCGGCGTCATCACCGTCGTGCCGGTGACGAGCA
ACATCGCCAAGGTCTATCCGTTTCAGGTGTTGTTGTCGGCCACCACTACTGGTCTCCAGGTCGACTGCAAGGCGCAGGCC
GAGCAAATCAGATCGATTGCTACCGAGCGGTTGCTCCGGCCAATCGGCCGAGTTTCAGCCGCCGAACTTGCCCAGCTCGA
TGAGGCTTTGAAACTGCATCTCGACTTATGGTCGTAG

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8231.01 Da        Isoelectric Point: 4.1809

>AT131053 WP_003901465.1 NZ_CP041817:c3104135-3103905 [Mycobacterium tuberculosis]
VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDAWEQTVGDGVGDAPR

Download         Length: 231 bp

>AT131053 NZ_CP041817:c3104135-3103905 [Mycobacterium tuberculosis]
GTGAAGTTGAGCGTGAGCCTGTCCGATGACGACGTCGCGATCCTGGACGCATATGTGAAACGAGCGGGATTACCATCCCG
CTCCGCCGGCCTGCAGCATGCGATCCGCGTGCTTCGCTACCCCACGCTCGAAGATGACTATGCCAACGCATGGCAAGAAT
GGTCGGCAGCCGGCGACACGGACGCGTGGGAGCAGACCGTCGGCGACGGAGTCGGTGATGCGCCGCGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L2A
PDB 5HJZ
PDB 6KYT
PDB 6L29
PDB 7DU5
PDB 6KYS

Antitoxin

Source ID Structure
PDB 7DU5
PDB 6KYT
AlphaFold DB A0A7U4FBW3

References