Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 2206614..2207158 Replicon chromosome
Accession NZ_CP041816
Organism Mycobacterium tuberculosis strain SEA00042P6C4

Toxin (Protein)


Gene name parE Uniprot ID G0TLU9
Locus tag FPJ93_RS10180 Protein ID WP_003409896.1
Coordinates 2206614..2206910 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID P67299
Locus tag FPJ93_RS10185 Protein ID WP_003409899.1
Coordinates 2206907..2207158 (-) Length 84 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ93_RS10125 2201647..2201997 - 351 WP_003899096.1 hypothetical protein -
FPJ93_RS10130 2202008..2202910 - 903 WP_003899097.1 hypothetical protein -
FPJ93_RS10135 2202931..2203122 - 192 WP_003409876.1 hypothetical protein -
FPJ93_RS10140 2203123..2203419 - 297 WP_003409877.1 hypothetical protein -
FPJ93_RS10145 2203659..2203874 + 216 WP_003409878.1 antitoxin -
FPJ93_RS10150 2203871..2204182 + 312 WP_003409881.1 type II toxin-antitoxin system VapC family toxin -
FPJ93_RS10155 2204156..2204677 - 522 WP_003904745.1 hypothetical protein -
FPJ93_RS10160 2204652..2205029 + 378 WP_010886136.1 type II toxin-antitoxin system toxin HigB -
FPJ93_RS10165 2205071..2205520 + 450 WP_003409886.1 type II toxin-antitoxin system antitoxin HigA -
FPJ93_RS10170 2205517..2206062 + 546 WP_003899098.1 SecB-like chaperone -
FPJ93_RS10175 2205951..2206565 - 615 WP_003901296.1 hypothetical protein -
FPJ93_RS10180 2206614..2206910 - 297 WP_003409896.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
FPJ93_RS10185 2206907..2207158 - 252 WP_003409899.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
FPJ93_RS10190 2207145..2207639 + 495 WP_003899099.1 hypothetical protein -
FPJ93_RS10195 2207799..2208206 - 408 WP_003409913.1 type II toxin-antitoxin system VapC family toxin -
FPJ93_RS10200 2208210..2208482 - 273 WP_003899100.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
FPJ93_RS10205 2208515..2209735 - 1221 WP_003409919.1 TetR family transcriptional regulator Mce3R -
FPJ93_RS10210 2210633..2211430 + 798 WP_003899101.1 ABC transporter permease -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(5-93)

Antitoxin

(2-80)


Sequences


Toxin        


Download         Length: 99 a.a.        Molecular weight: 11268.64 Da        Isoelectric Point: 6.8604

>T130974 WP_003409896.1 NZ_CP041816:c2206910-2206614 [Mycobacterium tuberculosis]
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL

Download         Length: 297 bp

>T130974 NZ_CP041816:c2206910-2206614 [Mycobacterium tuberculosis]
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9207.17 Da        Isoelectric Point: 7.0150

>AT130974 WP_003409899.1 NZ_CP041816:c2207158-2206907 [Mycobacterium tuberculosis]
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR

Download         Length: 252 bp

>AT130974 NZ_CP041816:c2207158-2206907 [Mycobacterium tuberculosis]
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB G0TLU9


Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BUZ2

References