Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 2856364..2857073 Replicon chromosome
Accession NZ_CP041809
Organism Mycobacterium tuberculosis strain SEA09020048P6C4

Toxin (Protein)


Gene name vapC Uniprot ID G0TQ26
Locus tag FPK00_RS13255 Protein ID WP_003413164.1
Coordinates 2856364..2856777 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P95006
Locus tag FPK00_RS13260 Protein ID WP_003413167.1
Coordinates 2856816..2857073 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPK00_RS13225 2851417..2852622 - 1206 WP_003413027.1 chorismate synthase -
FPK00_RS13230 2852730..2853044 + 315 WP_009937839.1 hypothetical protein -
FPK00_RS13235 2853340..2854551 + 1212 WP_003900845.1 alpha/beta hydrolase family protein -
FPK00_RS13240 2854678..2855337 + 660 WP_003900846.1 LppA family lipoprotein -
FPK00_RS13245 2855334..2855996 + 663 WP_003900848.1 hypothetical protein -
FPK00_RS13250 2855993..2856271 + 279 WP_003901422.1 type II toxin-antitoxin system VapB family antitoxin -
FPK00_RS13255 2856364..2856777 + 414 WP_003413164.1 PIN domain nuclease Toxin
FPK00_RS13260 2856816..2857073 + 258 WP_003413167.1 ribbon-helix-helix domain-containing protein Antitoxin
FPK00_RS13265 2857070..2857447 + 378 WP_003413174.1 type II toxin-antitoxin system VapC family toxin -
FPK00_RS13270 2857463..2857837 - 375 WP_003413177.1 hypothetical protein -
FPK00_RS13275 2857937..2858332 - 396 WP_003413180.1 type II toxin-antitoxin system toxin 23S rRNA-specific endonuclease VapC20 -
FPK00_RS13280 2858329..2858574 - 246 WP_003413183.1 type II toxin-antitoxin system antitoxin VapB20 -
FPK00_RS13285 2858985..2859404 - 420 WP_003413190.1 A24 family peptidase -
FPK00_RS13290 2859416..2860225 - 810 WP_003413193.1 shikimate dehydrogenase -
FPK00_RS13295 2860222..2861475 - 1254 WP_003413196.1 endolytic transglycosylase MltG -
FPK00_RS13300 2861468..2861980 - 513 WP_003413197.1 Holliday junction resolvase RuvX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-122)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15045.00 Da        Isoelectric Point: 5.4673

>T130560 WP_003413164.1 NZ_CP041809:2856364-2856777 [Mycobacterium tuberculosis]
MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLARIPVGAETFTRACQVQRE
LAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGTL

Download         Length: 414 bp

>T130560 NZ_CP041809:2856364-2856777 [Mycobacterium tuberculosis]
ATGGTGTTCTGCGTCGACACCAGCGCGTGGCATCACGCGGCGCGGCCGGAAGTTGCGCGCCGATGGTTGGCGGCCTTGTC
CGCGGACCAGATCGGCATCTGCGACCACGTGCGGTTGGAGATCCTGTACTCGGCGAACTCCGCTACCGACTACGACGCGC
TCGCCGACGAACTCGACGGCTTGGCCCGTATACCAGTCGGTGCCGAAACCTTTACGCGCGCATGCCAAGTCCAGCGTGAG
CTTGCCCACGTCGCCGGTCTGCATCACCGCAGCGTGAAGATCGCCGATCTTGTCATCGCCGCGGCGGCCGAACTTTCAGG
CACCATCGTGTGGCATTACGACGAGAACTATGACCGGGTCGCCGCCATCACCGGCCAACCTACGGAGTGGATCGTGCCGC
GCGGGACCCTTTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9453.63 Da        Isoelectric Point: 10.6555

>AT130560 WP_003413167.1 NZ_CP041809:2856816-2857073 [Mycobacterium tuberculosis]
MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGRDFTGTEYVDAIRGDLNERLA
RLGLA

Download         Length: 258 bp

>AT130560 NZ_CP041809:2856816-2857073 [Mycobacterium tuberculosis]
ATGCGGACTCAGGTGACCCTGGGCAAAGAGGAGCTTGAGCTGCTCGATCGTGCCGCCAAGGCGAGTGGCGCATCGCGGTC
CGAACTCATCCGACGCGCAATTCACCGTGCCTACGGGACTGGATCCAAGCAGGAACGGCTCGCCGCGCTCGACCACAGCC
GTGGCTCGTGGCGAGGACGGGACTTCACCGGCACCGAGTATGTCGACGCCATTCGGGGCGACCTCAACGAACGACTTGCT
CGGCTCGGTCTGGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQ26

Antitoxin

Source ID Structure
AlphaFold DB A0A829C9W5

References