Detailed information of TA system TA130498

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 2840311..2840951
• Replicon: chromosome
• Accession: NZ_CP041808
• Organism: Mycobacterium tuberculosis strain SEA09167P6C4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ08
• Locus tag: FPK01_RS13175
• Protein ID: WP_003412970.1
• Coordinates: 2840311..2840730 (-)
• Length: 140 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ09
• Locus tag: FPK01_RS13180
• Protein ID: WP_003412975.1
• Coordinates: 2840727..2840951 (-)
• Length: 75 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FPK01_RS13145	2835896..2836618	-	723	WP_003412957.1	DUF1906 domain-containing protein	-
FPK01_RS13150	2837135..2837362	+	228	WP_003412960.1	type II toxin-antitoxin system VapB family antitoxin	-
FPK01_RS13155	2837359..2837760	+	402	WP_003412963.1	PIN domain-containing protein	-
FPK01_RS13160	2837795..2838715	-	921	WP_003412965.1	restriction endonuclease	-
FPK01_RS13165	2839056..2839301	-	246	WP_071854223.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
FPK01_RS13170	2839360..2840310	+	951	WP_003911916.1	Lsr2 family protein	-
FPK01_RS13175	2840311..2840730	-	420	WP_003412970.1	type II toxin-antitoxin system VapC family toxin	Toxin
FPK01_RS13180	2840727..2840951	-	225	WP_003412975.1	antitoxin VapB39	Antitoxin
FPK01_RS13185	2840982..2843825	-	2844	WP_003899363.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
FPK01_RS13190	2843897..2844298	-	402	WP_003412981.1	hypothetical protein	-
FPK01_RS13195	2844303..2844767	-	465	Protein_2604	transcription antitermination factor NusB	-
FPK01_RS13200	2844770..2845333	-	564	WP_003412989.1	elongation factor P	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (4-128)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 140 a.a.
• Molecular weight: 14732.70 Da
• Isoelectric Point: 6.7519

>T130498 WP_003412970.1 NZ_CP041808:c2840730-2840311 [Mycobacterium tuberculosis]
VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPAIAIAQLAAMTSLAGHTF
WPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTFDAALADSASAGLVEVL

Nucleotide

• Length: 420 bp

>T130498 NZ_CP041808:c2840730-2840311 [Mycobacterium tuberculosis]
GTGACGGCACTGCTCGATGTCAATGTGCTGATCGCGCTGGGCTGGCCGAATCACGTTCACCATGCGGCCGCGCAGCGATG
GTTCACGCAGTTCTCCTCGAATGGGTGGGCCACCACGCCGATCACCGAGGCAGGGTATGTCCGAATTTCAAGCAATCGCA
GTGTGATGCAGGTGTCGACCACGCCGGCTATCGCGATCGCTCAGTTGGCGGCGATGACTTCTCTTGCCGGGCACACGTTT
TGGCCTGACGATGTGCCACTGATCGTTGGGAGCGCCGGCGATCGCGATGCGGTGTCCAACCACCGTCGGGTCACCGACTG
CCATCTCATCGCCTTGGCCGCGCGCTACGGGGGCCGGTTGGTCACATTCGATGCCGCACTGGCCGATTCAGCATCCGCAG
GCCTCGTCGAGGTGTTGTAG

Antitoxin

Protein

• Length: 75 a.a.
• Molecular weight: 7993.94 Da
• Isoelectric Point: 4.0057

>AT130498 WP_003412975.1 NZ_CP041808:c2840951-2840727 [Mycobacterium tuberculosis]
MRTTLQIDDDVLEDARSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPTVTSEDVVRALEDDV

Nucleotide

• Length: 225 bp

>AT130498 NZ_CP041808:c2840951-2840727 [Mycobacterium tuberculosis]
ATGCGCACCACGTTGCAGATTGATGATGATGTTCTAGAAGATGCTCGTAGCATCGCGCGGTCGGAGGGCAAGTCAGTCGG
CGCGGTAATTTCTGAGTTGGCGCGTAGGTCGCTCCGTCCGGTTGGGATTGTCGAGGTTGACGGATTTCCGGTTTTTGATG
TTCCGCCGGATGCGCCGACGGTGACTTCCGAGGATGTCGTCCGCGCGCTCGAGGACGACGTGTGA

Structures

Toxin

• AlphaFold DB: G0TQ08

Antitoxin

• AlphaFold DB: G0TQ09