Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Txe-YefM
Location 3758924..3759453 Replicon chromosome
Accession NZ_CP041807
Organism Mycobacterium tuberculosis strain SEA11020038P6C4

Toxin (Protein)


Gene name relE Uniprot ID G0TI95
Locus tag FPK02_RS17485 Protein ID WP_003417760.1
Coordinates 3759196..3759453 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID G0TI94
Locus tag FPK02_RS17480 Protein ID WP_003417757.1
Coordinates 3758924..3759199 (+) Length 92 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPK02_RS17460 3755723..3757160 - 1438 Protein_3448 FAD-binding oxidoreductase -
FPK02_RS17465 3757263..3757652 + 390 WP_003417745.1 DUF732 domain-containing protein -
FPK02_RS17470 3757666..3757959 - 294 WP_003417749.1 DUF3017 domain-containing protein -
FPK02_RS17475 3757956..3758801 - 846 WP_003417751.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
FPK02_RS17480 3758924..3759199 + 276 WP_003417757.1 type II toxin-antitoxin system antitoxin RelJ Antitoxin
FPK02_RS17485 3759196..3759453 + 258 WP_003417760.1 Txe/YoeB family addiction module toxin Toxin
FPK02_RS17490 3759495..3760685 + 1191 WP_003900033.1 NADH:flavin oxidoreductase -
FPK02_RS17495 3760802..3761170 + 369 WP_003417765.1 FHA domain-containing protein -
FPK02_RS17500 3761167..3761718 - 552 WP_031681422.1 pentapeptide repeat protein MfpA -
FPK02_RS17505 3761725..3762306 - 582 WP_003417769.1 ATP/GTP-binding protein -
FPK02_RS17510 3762287..3762655 - 369 WP_003417772.1 DUF742 domain-containing protein -
FPK02_RS17515 3762633..3763025 - 393 WP_003417776.1 roadblock/LC7 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(6-85)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(2-72)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10070.30 Da        Isoelectric Point: 6.4693

>T130452 WP_003417760.1 NZ_CP041807:3759196-3759453 [Mycobacterium tuberculosis]
VRSVNFDPDAWEDFLFWLAADRKTARRITRLIGEIQRDPFSGIGKPEPLQGELSGYWSRRIDDEHRLVYRAGDDEVTMLK
ARYHY

Download         Length: 258 bp

>T130452 NZ_CP041807:3759196-3759453 [Mycobacterium tuberculosis]
GTGAGAAGCGTCAACTTCGATCCCGATGCCTGGGAGGACTTCTTGTTCTGGCTGGCCGCTGATCGCAAAACGGCCCGTCG
GATCACCCGGTTGATCGGAGAAATTCAGCGTGATCCGTTCAGCGGGATCGGCAAACCCGAGCCGCTCCAAGGTGAGTTGT
CGGGATACTGGTCGCGCCGGATCGACGACGAACACCGGCTGGTGTATCGAGCGGGCGACGACGAAGTCACGATGCTGAAG
GCCCGATACCACTACTGA

Antitoxin


Download         Length: 92 a.a.        Molecular weight: 10194.35 Da        Isoelectric Point: 4.6652

>AT130452 WP_003417757.1 NZ_CP041807:3758924-3759199 [Mycobacterium tuberculosis]
MSISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSV
DELREMAGGEE

Download         Length: 276 bp

>AT130452 NZ_CP041807:3758924-3759199 [Mycobacterium tuberculosis]
ATGAGCATCAGTGCGAGCGAGGCGAGGCAGCGCCTGTTTCCACTCATCGAACAGGTCAATACCGATCACCAGCCGGTGCG
GATCACCTCCCGGGCCGGCGATGCGGTGCTGATGTCCGCCGACGACTACGACGCGTGGCAGGAAACGGTCTATCTGCTGC
GCTCACCGGAGAACGCCAGGCGGTTGATGGAAGCGGTTGCCCGGGATAAGGCTGGGCACTCGGCTTTCACCAAGTCTGTA
GATGAGCTGCGGGAGATGGCCGGCGGCGAGGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 3OEI

Antitoxin

Source ID Structure
PDB 3CTO
PDB 3OEI
PDB 3D55
AlphaFold DB G0TI94

References