Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 3690393..3691067 Replicon chromosome
Accession NZ_CP041806
Organism Mycobacterium tuberculosis strain SEA11020057P6C4

Toxin (Protein)


Gene name vapC Uniprot ID P9WF52
Locus tag FPK03_RS17315 Protein ID WP_003417282.1
Coordinates 3690393..3690821 (-) Length 143 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TI59
Locus tag FPK03_RS17320 Protein ID WP_003417286.1
Coordinates 3690825..3691067 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPK03_RS17290 3686215..3686616 - 402 WP_003417264.1 cytidine deaminase -
FPK03_RS17295 3686757..3687191 + 435 WP_003900017.1 succinate dehydrogenase, cytochrome b556 subunit -
FPK03_RS17300 3687188..3687622 + 435 WP_003913036.1 succinate dehydrogenase hydrophobic membrane anchor subunit -
FPK03_RS17305 3687751..3689523 + 1773 WP_003417273.1 succinate dehydrogenase flavoprotein subunit -
FPK03_RS17310 3689523..3690314 + 792 WP_057155080.1 succinate dehydrogenase iron-sulfur subunit -
FPK03_RS17315 3690393..3690821 - 429 WP_003417282.1 type II toxin-antitoxin system VapC family toxin Toxin
FPK03_RS17320 3690825..3691067 - 243 WP_003417286.1 ribbon-helix-helix domain-containing protein Antitoxin
FPK03_RS17325 3691189..3691803 - 615 WP_003417288.1 class I SAM-dependent methyltransferase -
FPK03_RS17330 3691800..3692465 - 666 WP_003417290.1 molybdopterin converting factor subunit 1 -
FPK03_RS17335 3692466..3692999 - 534 WP_003417293.1 cyclic pyranopterin monophosphate synthase MoaC -
FPK03_RS17340 3692996..3693370 - 375 WP_003417295.1 4a-hydroxytetrahydrobiopterin dehydratase -
FPK03_RS17345 3693467..3694531 - 1065 WP_003913037.1 GTP 3',8-cyclase MoaA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(1-141)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 143 a.a.        Molecular weight: 15834.16 Da        Isoelectric Point: 8.5471

>T130391 WP_003417282.1 NZ_CP041806:c3690821-3690393 [Mycobacterium tuberculosis]
MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVAHAIDLLARATHTRYHEFW
SCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTFDQSIALTAVPGATKQHLATL

Download         Length: 429 bp

>T130391 NZ_CP041806:c3690821-3690393 [Mycobacterium tuberculosis]
ATGCGAGCGCTGTTGGACGTCAACGTGCTACTGGCGCTGTTGGACCGCGATCACGTCGACCACGAGCGCGCCCGAGCGTG
GATCACCGGGCAGATCGAGCGGGGATGGGCTTCCTGTGCGATCACCCAAAACGGGTTCGTCCGCGTCATCAGCCAACCGC
GCTATCCCAGCCCAATCTCGGTAGCCCATGCCATCGACTTGTTGGCTCGTGCGACGCACACGCGCTATCACGAGTTCTGG
TCCTGCACCGTCAGCATTCTCGACTCAAAGGTCATCGATCGTTCCCGCCTGCACAGCCCCAAACAGGTCACCGACGCGTA
CTTGCTGGCCCTCGCGGTCGCTCATGATGGCCGATTTGTCACCTTCGATCAGTCGATTGCGTTGACTGCGGTTCCTGGCG
CAACCAAACAGCACCTGGCAACGCTGTAG

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8849.86 Da        Isoelectric Point: 5.1007

>AT130391 WP_003417286.1 NZ_CP041806:c3691067-3690825 [Mycobacterium tuberculosis]
MRTTLSIDDDVLLAVKERARREKRTAGEILSDLARQALTNQNPQPAASQEDAFHGFEPLPHRGGAVSNALIDRLRDEEAV

Download         Length: 243 bp

>AT130391 NZ_CP041806:c3691067-3690825 [Mycobacterium tuberculosis]
ATGCGCACCACGTTGTCCATCGACGACGATGTATTGCTGGCCGTGAAGGAACGGGCACGCAGGGAGAAGCGCACCGCGGG
TGAAATCCTGTCGGATCTGGCCCGGCAAGCGTTAACCAACCAGAATCCCCAGCCTGCGGCGAGCCAGGAGGACGCCTTTC
ATGGCTTCGAACCCCTGCCTCATCGCGGTGGAGCGGTATCGAACGCGCTGATCGATCGGCTTCGTGACGAGGAGGCCGTG
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4FBL0

Antitoxin

Source ID Structure
AlphaFold DB G0TI59

References