Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 708903..709528 Replicon chromosome
Accession NZ_CP041804
Organism Mycobacterium tuberculosis strain SEA11020092P6C4

Toxin (Protein)


Gene name vapC Uniprot ID G0TQA0
Locus tag FPK05_RS03230 Protein ID WP_003403218.1
Coordinates 709127..709528 (+) Length 134 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ36
Locus tag FPK05_RS03225 Protein ID WP_003403213.1
Coordinates 708903..709130 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPK05_RS03200 704082..704303 - 222 WP_003898525.1 DUF4926 domain-containing protein -
FPK05_RS03205 704445..705050 + 606 WP_003898526.1 hypothetical protein -
FPK05_RS03210 705069..707636 - 2568 WP_003900188.1 SEC-C domain-containing protein -
FPK05_RS03215 707720..708469 + 750 WP_003898528.1 hypothetical protein -
FPK05_RS03220 708466..708708 + 243 WP_003403210.1 hypothetical protein -
FPK05_RS03225 708903..709130 + 228 WP_003403213.1 antitoxin VapB29 Antitoxin
FPK05_RS03230 709127..709528 + 402 WP_003403218.1 type II toxin-antitoxin system ribonuclease VapC29 Toxin
FPK05_RS03235 709657..710352 + 696 WP_003900189.1 galactose-1-phosphate uridylyltransferase -
FPK05_RS03240 710349..710840 + 492 WP_012054156.1 galactose-1-phosphate uridylyltransferase -
FPK05_RS03245 710837..711928 + 1092 WP_003906403.1 galactokinase -
FPK05_RS03250 712323..713387 + 1065 WP_003898532.1 hypothetical protein -
FPK05_RS03255 713491..714438 + 948 WP_003403232.1 DUF732 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(3-120)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 134 a.a.        Molecular weight: 13937.76 Da        Isoelectric Point: 5.7441

>T130223 WP_003403218.1 NZ_CP041804:709127-709528 [Mycobacterium tuberculosis]
VTVLLDANVLIALVVAEHVHHDAAADWLMASDTGFATCPMTQGSLVRFLVRSGQSAAAARDVVSAVQCTSRHEFWPDALS
FAGVEVAGVVGHRQVTDAYLAQLARSHDGQLATLDSGLAHLHGDVAVLIPTTT

Download         Length: 402 bp

>T130223 NZ_CP041804:709127-709528 [Mycobacterium tuberculosis]
GTGACGGTGCTGCTCGACGCCAACGTGCTGATCGCATTGGTGGTCGCCGAGCATGTGCATCATGATGCCGCAGCGGACTG
GCTCATGGCGTCCGACACCGGATTTGCGACCTGCCCGATGACACAAGGAAGCCTGGTTCGATTCCTGGTGCGCTCGGGAC
AGTCCGCGGCGGCGGCTCGGGATGTCGTCAGTGCGGTCCAGTGCACGAGCCGCCACGAATTCTGGCCCGATGCACTCTCT
TTCGCCGGTGTCGAGGTCGCTGGTGTGGTTGGGCACCGGCAGGTGACCGATGCCTACCTTGCCCAGCTCGCGCGAAGCCA
CGACGGGCAGTTGGCGACGCTCGACAGCGGCTTAGCACACCTGCACGGCGACGTCGCGGTACTCATTCCAACGACCACCT
GA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8163.17 Da        Isoelectric Point: 5.6307

>AT130223 WP_003403213.1 NZ_CP041804:708903-709130 [Mycobacterium tuberculosis]
VRTTIDLPQDLHKQALAIARDTHRTLSETVADLMRRGLAANRPTALSSDPRTGLPLVSVGTVVTSEDVRSLEDEQ

Download         Length: 228 bp

>AT130223 NZ_CP041804:708903-709130 [Mycobacterium tuberculosis]
GTGCGCACTACCATCGACCTGCCGCAAGACCTGCACAAGCAGGCACTGGCGATTGCCCGGGATACGCACCGCACGTTGAG
TGAAACGGTCGCCGACCTCATGCGACGAGGCCTGGCCGCCAACCGCCCTACCGCGTTGTCCTCAGACCCCAGAACGGGAT
TGCCTTTGGTGAGCGTCGGGACCGTCGTGACCTCCGAGGACGTGCGTTCATTAGAGGACGAGCAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQA0

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BSC9

References