Detailed information of TA system TA129996

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 1242675..1243243
• Replicon: chromosome
• Accession: NZ_CP041800
• Organism: Mycobacterium tuberculosis strain SEA12334P6C4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TH08
• Locus tag: FPK09_RS05850
• Protein ID: WP_003405865.1
• Coordinates: 1242869..1243243 (+)
• Length: 125 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TH07
• Locus tag: FPK09_RS05845
• Protein ID: WP_003405863.1
• Coordinates: 1242675..1242872 (+)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FPK09_RS05825	1238716..1239354	-	639	WP_003898730.1	lipid droplet-associated protein	-
FPK09_RS05830	1239444..1240451	+	1008	WP_031674288.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
FPK09_RS05835	1240468..1241451	-	984	WP_003903326.1	hypothetical protein	-
FPK09_RS05840	1241514..1242587	+	1074	WP_003898732.1	redox-regulated ATPase YchF	-
FPK09_RS05845	1242675..1242872	+	198	WP_003405863.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
FPK09_RS05850	1242869..1243243	+	375	WP_003405865.1	type II toxin-antitoxin system VapC family toxin	Toxin
FPK09_RS05855	1243446..1244144	+	699	WP_003898733.1	hypothetical protein	-
FPK09_RS05860	1244262..1244447	+	186	WP_003901093.1	hypothetical protein	-
FPK09_RS05865	1244374..1244649	-	276	WP_003405867.1	hypothetical protein	-
FPK09_RS05870	1244892..1245215	+	324	WP_003405871.1	antibiotic biosynthesis monooxygenase	-
FPK09_RS05875	1245230..1245940	-	711	WP_003911399.1	hypothetical protein	-
FPK09_RS05880	1245962..1246171	+	210	WP_003911400.1	hypothetical protein	-
FPK09_RS05885	1246123..1246830	-	708	Protein_1159	adenylate/guanylate cyclase domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-111)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (1-42)

Sequences

Toxin

Protein

• Length: 125 a.a.
• Molecular weight: 13444.56 Da
• Isoelectric Point: 5.1881

>T129996 WP_003405865.1 NZ_CP041800:1242869-1243243 [Mycobacterium tuberculosis]
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS

Nucleotide

• Length: 375 bp

>T129996 NZ_CP041800:1242869-1243243 [Mycobacterium tuberculosis]
GTGATCCTGGTCGACACTTCGGTATGGATTGAGCACCTGCGCGCCGCCGACGCGCGACTCGTCGAGCTGCTGGGCGATGA
CGAGGCCGGTTGCCATCCGCTCGTCATCGAGGAGCTGGCGCTTGGCTCGATCAAGCAGCGAGACGTTGTTCTCGATCTGT
TGGCCAACCTCTACCAGTTTCCGGTGGTTACCCACGACGAAGTGTTGCGGCTTGTCGGTCGGCGGCGGTTGTGGGGTCGG
GGACTCGGTGCCGTCGATGCCAACCTTCTTGGTTCGGTGGCTCTGGTTGGCGGCGCGCGACTATGGACGCGGGACAAGCG
GTTGAAGGCGGCGTGCGCGGAAAGCGGTGTTGCGCTGGCTGAGGAAGTGTCCTGA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 6973.03 Da
• Isoelectric Point: 11.7327

>AT129996 WP_003405863.1 NZ_CP041800:1242675-1242872 [Mycobacterium tuberculosis]
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR

Nucleotide

• Length: 198 bp

>AT129996 NZ_CP041800:1242675-1242872 [Mycobacterium tuberculosis]
ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCT
CCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAG
CTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA

Structures

Toxin

• AlphaFold DB: G0TH08

Antitoxin

• AlphaFold DB: G0TH07