Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-RHH |
| Location | 2187093..2187637 | Replicon | chromosome |
| Accession | NZ_CP041797 | ||
| Organism | Mycobacterium tuberculosis strain SEA14117P6C4 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | G0TLU9 |
| Locus tag | FPK12_RS10110 | Protein ID | WP_003409896.1 |
| Coordinates | 2187093..2187389 (-) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | P67299 |
| Locus tag | FPK12_RS10115 | Protein ID | WP_003409899.1 |
| Coordinates | 2187386..2187637 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FPK12_RS10055 | 2182126..2182476 | - | 351 | WP_003409871.1 | hypothetical protein | - |
| FPK12_RS10060 | 2182487..2183389 | - | 903 | WP_003899097.1 | hypothetical protein | - |
| FPK12_RS10065 | 2183410..2183601 | - | 192 | WP_003901295.1 | hypothetical protein | - |
| FPK12_RS10070 | 2183602..2183898 | - | 297 | WP_003409877.1 | hypothetical protein | - |
| FPK12_RS10075 | 2184138..2184353 | + | 216 | WP_003409878.1 | antitoxin | - |
| FPK12_RS10080 | 2184350..2184661 | + | 312 | WP_003409881.1 | type II toxin-antitoxin system VapC family toxin | - |
| FPK12_RS10085 | 2184635..2185156 | - | 522 | WP_003904745.1 | hypothetical protein | - |
| FPK12_RS10090 | 2185131..2185508 | + | 378 | WP_010886136.1 | type II toxin-antitoxin system toxin HigB | - |
| FPK12_RS10095 | 2185550..2185999 | + | 450 | WP_003409886.1 | type II toxin-antitoxin system antitoxin HigA | - |
| FPK12_RS10100 | 2185996..2186541 | + | 546 | WP_003409891.1 | SecB-like chaperone | - |
| FPK12_RS10105 | 2186430..2187044 | - | 615 | WP_003901296.1 | hypothetical protein | - |
| FPK12_RS10110 | 2187093..2187389 | - | 297 | WP_003409896.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| FPK12_RS10115 | 2187386..2187637 | - | 252 | WP_003409899.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| FPK12_RS10120 | 2187624..2188118 | + | 495 | WP_003899099.1 | hypothetical protein | - |
| FPK12_RS10125 | 2188278..2188685 | - | 408 | WP_003409913.1 | type II toxin-antitoxin system VapC family toxin | - |
| FPK12_RS10130 | 2188689..2188961 | - | 273 | WP_003899100.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| FPK12_RS10135 | 2188994..2190214 | - | 1221 | WP_003409919.1 | TetR family transcriptional regulator Mce3R | - |
| FPK12_RS10140 | 2191113..2191910 | + | 798 | WP_003899101.1 | ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11268.64 Da Isoelectric Point: 6.8604
>T129827 WP_003409896.1 NZ_CP041797:c2187389-2187093 [Mycobacterium tuberculosis]
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
Download Length: 297 bp
>T129827 NZ_CP041797:c2187389-2187093 [Mycobacterium tuberculosis]
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9207.17 Da Isoelectric Point: 7.0150
>AT129827 WP_003409899.1 NZ_CP041797:c2187637-2187386 [Mycobacterium tuberculosis]
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
Download Length: 252 bp
>AT129827 NZ_CP041797:c2187637-2187386 [Mycobacterium tuberculosis]
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | G0TLU9 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7U4BUZ2 |