Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 706253..706878 Replicon chromosome
Accession NZ_CP041797
Organism Mycobacterium tuberculosis strain SEA14117P6C4

Toxin (Protein)


Gene name vapC Uniprot ID G0TQA0
Locus tag FPK12_RS03200 Protein ID WP_003403218.1
Coordinates 706477..706878 (+) Length 134 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ36
Locus tag FPK12_RS03195 Protein ID WP_003403213.1
Coordinates 706253..706480 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPK12_RS03170 701432..701653 - 222 WP_003898525.1 DUF4926 domain-containing protein -
FPK12_RS03175 701795..702400 + 606 WP_003898526.1 hypothetical protein -
FPK12_RS03180 702419..704986 - 2568 WP_025987927.1 SEC-C domain-containing protein -
FPK12_RS03185 705070..705819 + 750 WP_003898528.1 hypothetical protein -
FPK12_RS03190 705816..706058 + 243 WP_003403210.1 hypothetical protein -
FPK12_RS03195 706253..706480 + 228 WP_003403213.1 antitoxin VapB29 Antitoxin
FPK12_RS03200 706477..706878 + 402 WP_003403218.1 type II toxin-antitoxin system ribonuclease VapC29 Toxin
FPK12_RS03205 707007..707702 + 696 WP_003900189.1 galactose-1-phosphate uridylyltransferase -
FPK12_RS03210 707699..708190 + 492 WP_003905354.1 galactose-1-phosphate uridylyltransferase -
FPK12_RS03215 708187..709278 + 1092 WP_003900977.1 galactokinase -
FPK12_RS03220 709673..710737 + 1065 WP_003898532.1 hypothetical protein -
FPK12_RS03225 710841..711788 + 948 WP_038338261.1 DUF732 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(3-120)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 134 a.a.        Molecular weight: 13937.76 Da        Isoelectric Point: 5.7441

>T129804 WP_003403218.1 NZ_CP041797:706477-706878 [Mycobacterium tuberculosis]
VTVLLDANVLIALVVAEHVHHDAAADWLMASDTGFATCPMTQGSLVRFLVRSGQSAAAARDVVSAVQCTSRHEFWPDALS
FAGVEVAGVVGHRQVTDAYLAQLARSHDGQLATLDSGLAHLHGDVAVLIPTTT

Download         Length: 402 bp

>T129804 NZ_CP041797:706477-706878 [Mycobacterium tuberculosis]
GTGACGGTGCTGCTCGACGCCAACGTGCTGATCGCATTGGTGGTCGCCGAGCATGTGCATCATGATGCCGCAGCGGACTG
GCTCATGGCGTCCGACACCGGATTTGCGACCTGCCCGATGACACAAGGAAGCCTGGTTCGATTCCTGGTGCGCTCGGGAC
AGTCCGCGGCGGCGGCTCGGGATGTCGTCAGTGCGGTCCAGTGCACGAGCCGCCACGAATTCTGGCCCGATGCACTCTCT
TTCGCCGGTGTCGAGGTCGCTGGTGTGGTTGGGCACCGGCAGGTGACCGATGCCTACCTTGCCCAGCTCGCGCGAAGCCA
CGACGGGCAGTTGGCGACGCTCGACAGCGGCTTAGCACACCTGCACGGCGACGTCGCGGTACTCATTCCAACGACCACCT
GA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8163.17 Da        Isoelectric Point: 5.6307

>AT129804 WP_003403213.1 NZ_CP041797:706253-706480 [Mycobacterium tuberculosis]
VRTTIDLPQDLHKQALAIARDTHRTLSETVADLMRRGLAANRPTALSSDPRTGLPLVSVGTVVTSEDVRSLEDEQ

Download         Length: 228 bp

>AT129804 NZ_CP041797:706253-706480 [Mycobacterium tuberculosis]
GTGCGCACTACCATCGACCTGCCGCAAGACCTGCACAAGCAGGCACTGGCGATTGCCCGGGATACGCACCGCACGTTGAG
TGAAACGGTCGCCGACCTCATGCGACGAGGCCTGGCCGCCAACCGCCCTACCGCGTTGTCCTCAGACCCCAGAACGGGAT
TGCCTTTGGTGAGCGTCGGGACCGTCGTGACCTCCGAGGACGTGCGTTCATTAGAGGACGAGCAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQA0

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BSC9

References