Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 2953821..2954535 Replicon chromosome
Accession NZ_CP041793
Organism Mycobacterium tuberculosis strain SEA15229P6C4

Toxin (Protein)


Gene name vapC Uniprot ID G0TQK0
Locus tag FPK17_RS13680 Protein ID WP_003413460.1
Coordinates 2954095..2954535 (+) Length 147 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ20
Locus tag FPK17_RS13675 Protein ID WP_003413456.1
Coordinates 2953821..2954108 (+) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPK17_RS13640 2949243..2949488 + 246 WP_003413429.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
FPK17_RS13645 2949485..2949889 + 405 WP_003413432.1 type II toxin-antitoxin system VapC family toxin -
FPK17_RS13650 2950106..2950726 + 621 WP_003413441.1 DUF4178 domain-containing protein -
FPK17_RS13655 2950737..2951231 + 495 WP_003413444.1 DUF2617 family protein -
FPK17_RS13660 2951228..2951659 + 432 WP_003413445.1 DUF4247 domain-containing protein -
FPK17_RS13665 2951684..2952142 + 459 WP_003413451.1 DUF350 domain-containing protein -
FPK17_RS13670 2952139..2953710 + 1572 WP_003899392.1 polyamine aminopropyltransferase -
FPK17_RS13675 2953821..2954108 + 288 WP_003413456.1 antitoxin VapB41 Antitoxin
FPK17_RS13680 2954095..2954535 + 441 WP_003413460.1 type II toxin-antitoxin system VapC family toxin Toxin
FPK17_RS13685 2954556..2955311 - 756 WP_003413464.1 YebC/PmpR family DNA-binding transcriptional regulator -
FPK17_RS13690 2955444..2956040 - 597 WP_003413465.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
FPK17_RS13695 2956048..2956893 - 846 WP_003413466.1 acyl-CoA thioesterase II -
FPK17_RS13700 2956922..2957821 - 900 WP_003413468.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
FPK17_RS13705 2957949..2958623 + 675 WP_003413471.1 pyridoxamine 5'-phosphate oxidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(1-146)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 147 a.a.        Molecular weight: 16026.38 Da        Isoelectric Point: 6.8599

>T129602 WP_003413460.1 NZ_CP041793:2954095-2954535 [Mycobacterium tuberculosis]
MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSPPLTNREAWAAYAAFLDDD
RIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTGGFELVTTDTAFTQYGGIELRLLAK

Download         Length: 441 bp

>T129602 NZ_CP041793:2954095-2954535 [Mycobacterium tuberculosis]
ATGCTGCTCTGTGACACCAACATCTGGCTGGCGTTGGCGCTTTCCGGACACGTGCACCACAGGGCCTCGCGCGCATGGCT
AGACACCATCAACGCGCCCGGAGTCATCCACTTTTGCCGCGCAACCCAACAGTCGCTCCTTCGGCTGTTGACGAATCGGA
CGGTGCTGGGCGCGTATGGCAGCCCACCACTGACCAACCGCGAAGCGTGGGCGGCCTATGCCGCGTTCCTGGATGACGAC
CGCATCGTGCTGGCCGGCGCCGAACCTGATGGTTTGGAGGCCCAGTGGAGAGCCTTCGCCGTTCGCCAGTCGCCGGCGCC
CAAGGTTTGGATGGATGCCTACCTAGCTGCTTTCGCACTTACCGGTGGATTCGAGTTGGTGACGACTGACACCGCCTTCA
CCCAGTACGGCGGAATCGAGCTGCGGCTCCTGGCCAAGTGA

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10453.98 Da        Isoelectric Point: 7.2797

>AT129602 WP_003413456.1 NZ_CP041793:2953821-2954108 [Mycobacterium tuberculosis]
MKTTLDLPDELMRAIKVRAAQQGRKMKDVVTELLRSGLSQTHSGAPIPTPRRVQLPLVHCGGAATREQEMTPERVAAALL
DQEAQWWSGHDDAAL

Download         Length: 288 bp

>AT129602 NZ_CP041793:2953821-2954108 [Mycobacterium tuberculosis]
ATGAAGACCACGCTCGACCTGCCTGATGAACTGATGCGCGCTATCAAGGTCCGCGCGGCGCAGCAGGGCCGCAAGATGAA
AGATGTCGTGACCGAACTGCTCAGATCCGGTCTGTCCCAGACGCACAGCGGGGCTCCAATCCCAACGCCGCGGCGCGTGC
AGCTTCCCCTGGTGCATTGCGGTGGCGCGGCTACCCGCGAACAAGAAATGACGCCGGAGCGTGTTGCCGCGGCCTTGCTC
GACCAGGAGGCCCAGTGGTGGTCCGGACACGACGATGCTGCTCTGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQK0

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BWB8

References