Detailed information of TA system TA129560

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN-CcdA
• Location: 644468..645144
• Replicon: chromosome
• Accession: NZ_CP041793
• Organism: Mycobacterium tuberculosis strain SEA15229P6C4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: FPK17_RS02875
• Protein ID: WP_031677127.1
• Coordinates: 644468..644881 (-)
• Length: 138 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TPR0
• Locus tag: FPK17_RS02880
• Protein ID: WP_003402915.1
• Coordinates: 644878..645144 (-)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FPK17_RS02845	639813..640115	-	303	WP_003402896.1	DUF3349 domain-containing protein	-
FPK17_RS02850	640175..640453	-	279	WP_003402901.1	hypothetical protein	-
FPK17_RS02855	640450..641703	-	1254	WP_003402904.1	inorganic phosphate transporter family protein	-
FPK17_RS02860	641823..642209	-	387	WP_003402907.1	VOC family protein	-
FPK17_RS02865	642272..643156	-	885	WP_003402909.1	SDR family oxidoreductase	-
FPK17_RS02870	643252..644154	-	903	WP_003915439.1	1,4-dihydroxy-2-naphthoyl-CoA synthase	-
FPK17_RS02875	644468..644881	-	414	WP_031677127.1	PIN domain-containing protein	Toxin
FPK17_RS02880	644878..645144	-	267	WP_003402915.1	antitoxin VapB3	Antitoxin
FPK17_RS02885	645336..647051	-	1716	WP_003402917.1	fatty-acid--CoA ligase FadD8	-
FPK17_RS02890	647129..648733	+	1605	WP_003903056.1	amidohydrolase	-
FPK17_RS02895	648730..649710	+	981	WP_003402923.1	o-succinylbenzoate synthase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Pae0151-like, PIN domain (13-129)

Antitoxin

• Post-segregation antitoxin CcdA (19-61)

Sequences

Toxin

Protein

• Length: 138 a.a.
• Molecular weight: 14693.86 Da
• Isoelectric Point: 7.3603

>T129560 WP_031677127.1 NZ_CP041793:c644881-644468 [Mycobacterium tuberculosis]
VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQV
PVTRHGLSLLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWPSAHAIG

Nucleotide

• Length: 414 bp

>T129560 NZ_CP041793:c644881-644468 [Mycobacterium tuberculosis]
GTGAGAGCATCGCCCACTTCGCCGCCGGAGCAGGTGGTCGTCGACGCGAGTGCCATGGTGGATCTACTGGCTCGCACTAG
CGATCGGTGCTCTGCGGTGCGCGCGCGGCTGGCTCGGACCGCGATGCACGCGCCGGCGCACTTCGATGCAGAGGTGTTGT
CGGCGCTGGGGCGCATGCAGCGCGCCGGCGCACTCACCGTTGCCTATGTCGATGCGGCACTGGAGGAGTTGCGACAGGTG
CCGGTGACTCGACACGGTCTTTCGTTGCTGCTTGCTGGAGCGTGGTCGCGCCGCGACACCCTCCGCCTGACCGATGCCCT
CTACGTCGAGCTGGCCGAAACGGCAGGTCTGGTGTTGTTGACCACCGACGAAAGATTGGCACGCGCCTGGCCCTCGGCTC
ACGCCATCGGCTGA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 9543.79 Da
• Isoelectric Point: 4.5994

>AT129560 WP_003402915.1 NZ_CP041793:c645144-644878 [Mycobacterium tuberculosis]
MLSRRTKTIVVCTLVCMARLNVYVPDELAERARARGLNVSALTQAAISAELENSATDAWLEGLEPRSTGARHDDVLGAID
AARDEFEA

Nucleotide

• Length: 267 bp

>AT129560 NZ_CP041793:c645144-644878 [Mycobacterium tuberculosis]
TTGTTGAGCCGGCGCACGAAAACGATCGTTGTGTGTACATTGGTGTGTATGGCTCGGTTGAACGTGTATGTGCCCGACGA
ATTGGCGGAGCGCGCCAGGGCGCGGGGCTTGAACGTCTCGGCGCTGACTCAGGCCGCGATCAGTGCCGAGTTGGAGAACT
CCGCAACCGATGCGTGGCTTGAGGGGTTGGAACCCAGAAGCACCGGCGCTCGGCATGATGACGTGCTGGGTGCGATCGAT
GCCGCTCGCGATGAGTTCGAAGCGTGA

Structures

Antitoxin

• AlphaFold DB: G0TPR0