Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 709187..709812 Replicon chromosome
Accession NZ_CP041789
Organism Mycobacterium tuberculosis strain SEA17020028P6C4

Toxin (Protein)


Gene name vapC Uniprot ID G0TQA0
Locus tag FPK21_RS03220 Protein ID WP_003403218.1
Coordinates 709411..709812 (+) Length 134 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ36
Locus tag FPK21_RS03215 Protein ID WP_003403213.1
Coordinates 709187..709414 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPK21_RS03190 704366..704587 - 222 WP_003898525.1 DUF4926 domain-containing protein -
FPK21_RS03195 704729..705334 + 606 WP_003898526.1 hypothetical protein -
FPK21_RS03200 705353..707920 - 2568 WP_003901879.1 SEC-C domain-containing protein -
FPK21_RS03205 708004..708753 + 750 WP_003898528.1 hypothetical protein -
FPK21_RS03210 708750..708992 + 243 WP_003403210.1 hypothetical protein -
FPK21_RS03215 709187..709414 + 228 WP_003403213.1 antitoxin VapB29 Antitoxin
FPK21_RS03220 709411..709812 + 402 WP_003403218.1 type II toxin-antitoxin system ribonuclease VapC29 Toxin
FPK21_RS03225 709941..710636 + 696 WP_003900189.1 galactose-1-phosphate uridylyltransferase -
FPK21_RS03230 710633..711124 + 492 WP_003905354.1 galactose-1-phosphate uridylyltransferase -
FPK21_RS03235 711121..712212 + 1092 WP_003900977.1 galactokinase -
FPK21_RS03240 712607..713671 + 1065 WP_003898532.1 hypothetical protein -
FPK21_RS03245 713775..714722 + 948 WP_003403232.1 DUF732 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(3-120)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 134 a.a.        Molecular weight: 13937.76 Da        Isoelectric Point: 5.7441

>T129325 WP_003403218.1 NZ_CP041789:709411-709812 [Mycobacterium tuberculosis]
VTVLLDANVLIALVVAEHVHHDAAADWLMASDTGFATCPMTQGSLVRFLVRSGQSAAAARDVVSAVQCTSRHEFWPDALS
FAGVEVAGVVGHRQVTDAYLAQLARSHDGQLATLDSGLAHLHGDVAVLIPTTT

Download         Length: 402 bp

>T129325 NZ_CP041789:709411-709812 [Mycobacterium tuberculosis]
GTGACGGTGCTGCTCGACGCCAACGTGCTGATCGCATTGGTGGTCGCCGAGCATGTGCATCATGATGCCGCAGCGGACTG
GCTCATGGCGTCCGACACCGGATTTGCGACCTGCCCGATGACACAAGGAAGCCTGGTTCGATTCCTGGTGCGCTCGGGAC
AGTCCGCGGCGGCGGCTCGGGATGTCGTCAGTGCGGTCCAGTGCACGAGCCGCCACGAATTCTGGCCCGATGCACTCTCT
TTCGCCGGTGTCGAGGTCGCTGGTGTGGTTGGGCACCGGCAGGTGACCGATGCCTACCTTGCCCAGCTCGCGCGAAGCCA
CGACGGGCAGTTGGCGACGCTCGACAGCGGCTTAGCACACCTGCACGGCGACGTCGCGGTACTCATTCCAACGACCACCT
GA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8163.17 Da        Isoelectric Point: 5.6307

>AT129325 WP_003403213.1 NZ_CP041789:709187-709414 [Mycobacterium tuberculosis]
VRTTIDLPQDLHKQALAIARDTHRTLSETVADLMRRGLAANRPTALSSDPRTGLPLVSVGTVVTSEDVRSLEDEQ

Download         Length: 228 bp

>AT129325 NZ_CP041789:709187-709414 [Mycobacterium tuberculosis]
GTGCGCACTACCATCGACCTGCCGCAAGACCTGCACAAGCAGGCACTGGCGATTGCCCGGGATACGCACCGCACGTTGAG
TGAAACGGTCGCCGACCTCATGCGACGAGGCCTGGCCGCCAACCGCCCTACCGCGTTGTCCTCAGACCCCAGAACGGGAT
TGCCTTTGGTGAGCGTCGGGACCGTCGTGACCTCCGAGGACGTGCGTTCATTAGAGGACGAGCAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQA0

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BSC9

References