129283

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 1942463..1943076 Replicon chromosome
Accession NZ_CP041788
Organism Mycobacterium tuberculosis strain SEA17020030P6C4

Toxin (Protein)


Gene name vapC Uniprot ID P9WFA2
Locus tag FPK22_RS08930 Protein ID WP_003408465.1
Coordinates 1942463..1942852 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ52
Locus tag FPK22_RS08935 Protein ID WP_003408469.1
Coordinates 1942849..1943076 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPK22_RS08900 1938092..1939006 + 915 WP_003898985.1 3-hydroxyacyl-CoA dehydrogenase family protein -
FPK22_RS08905 1939009..1939839 + 831 WP_003408448.1 cyclase family protein -
FPK22_RS08910 1939839..1940189 + 351 WP_003898986.1 cupin domain-containing protein -
FPK22_RS08915 1940242..1941060 + 819 WP_003408456.1 3-keto-5-aminohexanoate cleavage protein -
FPK22_RS08920 1941074..1941853 + 780 WP_003408460.1 IclR family transcriptional regulator -
FPK22_RS08930 1942463..1942852 - 390 WP_003408465.1 PIN domain-containing protein Toxin
FPK22_RS08935 1942849..1943076 - 228 WP_003408469.1 antitoxin Antitoxin
FPK22_RS08940 1943294..1944778 + 1485 WP_003408473.1 carboxylase -
FPK22_RS08945 1944775..1946022 + 1248 WP_003408476.1 serine hydrolase -
FPK22_RS08950 1946065..1946484 - 420 WP_003408483.1 hypothetical protein -
FPK22_RS08955 1946474..1947182 - 709 Protein_1766 winged helix-turn-helix transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-116)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 13817.98 Da        Isoelectric Point: 7.0612

>T129283 WP_003408465.1 NZ_CP041788:c1942852-1942463 [Mycobacterium tuberculosis]
VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFT
QRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELVA

Download         Length: 390 bp

>T129283 NZ_CP041788:c1942852-1942463 [Mycobacterium tuberculosis]
GTGATCGTGTTGGACGCCTCGGCGGCCGTCGAGCTCATGCTCACGACGCCGGCGGGTGCGGCGGTCGCCCGGCGCTTGCG
GGGCGAAACCGTGCACGCCCCTGCACATTTCGATGTCGAGGTGATCGGGGCGATACGTCAAGCGGTCGTGCGTCAGCTGA
TCAGCGATCATGAAGGACTCGTCGTGGTTGTCAACTTCCTTAGCCTGCCCGTTCGGCGTTGGCCGTTAAAGCCATTCACC
CAGCGTGCCTACCAACTTCGGTCCACTCATACCGTGGCCGATGGAGCCTACGTCGCCCTCGCCGAGGGCCTCGGCGTACC
GCTTATCACTTGCGACGGGCGACTTGCCCAATCCCATGGCCATAATGCGGAGATCGAGCTTGTCGCCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8226.39 Da        Isoelectric Point: 4.3313

>AT129283 WP_003408469.1 NZ_CP041788:c1943076-1942849 [Mycobacterium tuberculosis]
MSAMVQIRNVPDELLHELKARAAAQRMSLSDFLLARLAEIAEEPALDDVLDRLAALPRRDLGASAAELVDEARSE

Download         Length: 228 bp

>AT129283 NZ_CP041788:c1943076-1942849 [Mycobacterium tuberculosis]
ATGTCCGCCATGGTTCAGATCCGCAACGTTCCCGACGAGCTTCTCCACGAGCTGAAGGCCCGCGCAGCGGCGCAACGGAT
GAGCCTGAGCGATTTCCTCCTAGCACGGCTTGCCGAGATCGCGGAAGAACCGGCCCTCGACGACGTTCTCGACCGTCTAG
CGGCACTGCCGCGCCGGGATCTCGGCGCGAGCGCAGCCGAGCTTGTTGACGAGGCTCGATCTGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BUI9

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4FAN9

References