Detailed information of TA system TA129219

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): PfiT-PfiA/ParE(toxin)
• Location: 813369..813977
• Replicon: chromosome
• Accession: NZ_CP041773
• Organism: Pseudomonas aeruginosa strain 519119

Toxin (Protein)

• Gene name: PfiT
• Uniprot ID: -
• Locus tag: FOY95_RS04075
• Protein ID: WP_016263850.1
• Coordinates: 813369..813716 (-)
• Length: 116 a.a.

Antitoxin (Protein)

• Gene name: PfiA
• Uniprot ID: A0A0B0C355
• Locus tag: FOY95_RS04080
• Protein ID: WP_003114155.1
• Coordinates: 813726..813977 (-)
• Length: 84 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FOY95_RS04045	808728..809000	+	273	WP_019725834.1	cysteine-rich CWC family protein	-
FOY95_RS04050	809000..809692	+	693	WP_003098362.1	16S rRNA pseudouridine(516) synthase	-
FOY95_RS04055	809828..810871	+	1044	WP_003098363.1	L,D-transpeptidase	-
FOY95_RS04060	810951..811688	+	738	WP_003114158.1	murein L,D-transpeptidase catalytic domain family protein	-
FOY95_RS04065	812140..813042	+	903	WP_003123042.1	(R)-3-hydroxydecanoyl-ACP:CoA transacylase	-
FOY95_RS04075	813369..813716	-	348	WP_016263850.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
FOY95_RS04080	813726..813977	-	252	WP_003114155.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
FOY95_RS04085	814191..815174	-	984	WP_019725833.1	tyrosine-type recombinase/integrase	-
FOY95_RS04090	815174..816466	-	1293	WP_003115206.1	hypothetical protein	-
FOY95_RS04095	816725..817987	-	1263	WP_124171395.1	hypothetical protein	-
FOY95_RS04100	817989..818339	-	351	WP_019725830.1	DUF2523 domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Prophage	catB7	-	813369..835512	22143

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (6-100)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 116 a.a.
• Molecular weight: 13046.85 Da
• Isoelectric Point: 4.4212

>T129219 WP_016263850.1 NZ_CP041773:c813716-813369 [Pseudomonas aeruginosa]
MSPVVIRFTDTAEQSIEDQVHHLVPFQGEQAAFQSVLSLLDEIEEKISLAPKGYPVSQQASLLGVLSYRELNTGPYRVFY
EFHEEQGEVAVILVLRQKQSVEQQLIRYCLVGPIE

Nucleotide

• Length: 348 bp

>T129219 NZ_CP041773:c813716-813369 [Pseudomonas aeruginosa]
ATGTCCCCGGTCGTCATTCGTTTTACTGATACCGCAGAGCAAAGCATCGAAGACCAAGTCCACCACTTGGTTCCATTCCA
AGGTGAACAGGCTGCATTCCAGTCAGTACTGAGCCTTTTGGATGAGATTGAAGAGAAGATTTCACTTGCACCTAAAGGTT
ACCCAGTCAGCCAGCAGGCGAGTCTTCTGGGGGTGCTGAGCTATCGCGAGCTTAATACCGGCCCCTATCGTGTTTTTTAC
GAATTCCACGAAGAGCAAGGCGAGGTGGCAGTGATCTTGGTTTTGCGACAGAAGCAGAGCGTTGAGCAGCAATTGATCCG
CTACTGCTTGGTGGGGCCAATCGAGTGA

Antitoxin

Protein

• Length: 84 a.a.
• Molecular weight: 9442.79 Da
• Isoelectric Point: 9.4808

>AT129219 WP_003114155.1 NZ_CP041773:c813977-813726 [Pseudomonas aeruginosa]
MRVETISYLKRHAADLDLSEPMVVTQNGVPAYVVESYAERKQRDEAIALVKLLAIGSRQYAEGKHRSVDDLKARLSRRFA
QPE

Nucleotide

• Length: 252 bp

>AT129219 NZ_CP041773:c813977-813726 [Pseudomonas aeruginosa]
ATGCGAGTCGAGACAATTAGTTATTTGAAACGTCATGCGGCTGACTTGGATTTATCCGAGCCAATGGTCGTCACGCAGAA
CGGTGTTCCTGCCTATGTGGTTGAGTCATATGCTGAGCGGAAGCAGCGCGATGAAGCAATTGCGCTGGTGAAGTTGCTTG
CGATTGGCTCCCGCCAGTACGCAGAAGGCAAGCATCGCTCTGTTGATGATTTGAAAGCTCGCCTTTCCAGGAGGTTCGCT
CAGCCAGAATAA

Structures

Antitoxin

• AlphaFold DB: A0A0B0C355