Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4324053..4324167 | Replicon | chromosome |
| Accession | NZ_CP041764 | ||
| Organism | Serratia rhizosphaerae strain KUDC3025 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4324070..4324166 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4324053..4324167 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FO014_RS20020 | 4319689..4320647 | + | 959 | Protein_3895 | prolyl aminopeptidase | - |
| FO014_RS20025 | 4320687..4320917 | - | 231 | WP_160030797.1 | DNA polymerase III subunit theta | - |
| FO014_RS20030 | 4321306..4321824 | + | 519 | WP_160030798.1 | non-heme ferritin | - |
| FO014_RS20035 | 4321859..4322086 | + | 228 | WP_160030799.1 | hypothetical protein | - |
| FO014_RS20040 | 4322250..4322633 | + | 384 | WP_160030800.1 | CopC domain-containing protein YobA | - |
| FO014_RS20045 | 4322637..4323518 | + | 882 | WP_160030801.1 | copper homeostasis membrane protein CopD | - |
| FO014_RS20050 | 4323587..4323928 | + | 342 | WP_160030802.1 | YebY family protein | - |
| - | 4324053..4324167 | - | 115 | - | - | Antitoxin |
| - | 4324070..4324166 | + | 97 | - | - | Toxin |
| FO014_RS20055 | 4324245..4324559 | - | 315 | WP_160030803.1 | tyrosine-type recombinase/integrase | - |
| FO014_RS20060 | 4324821..4325000 | + | 180 | WP_160030804.1 | hypothetical protein | - |
| FO014_RS20065 | 4325134..4326225 | - | 1092 | WP_160030805.1 | Rieske 2Fe-2S domain-containing protein | - |
| FO014_RS20070 | 4326250..4327953 | - | 1704 | WP_160030806.1 | tryptophan 7-halogenase | - |
| FO014_RS20075 | 4327997..4329082 | - | 1086 | WP_160030807.1 | DUF1864 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T129192 NZ_CP041764:4324070-4324166 [Serratia rhizosphaerae]
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 115 bp
>AT129192 NZ_CP041764:c4324167-4324053 [Serratia rhizosphaerae]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
