Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4785365..4785636 | Replicon | chromosome |
| Accession | NZ_CP041749 | ||
| Organism | Escherichia coli strain NCCP 15955 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4785403..4785506 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4785365..4785636 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOV95_RS23320 | 4782522..4783961 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FOV95_RS23325 | 4784079..4784315 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FOV95_RS23330 | 4784420..4784611 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FOV95_RS23335 | 4784612..4785268 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 4785365..4785636 | + | 272 | - | - | Antitoxin |
| - | 4785403..4785506 | - | 104 | - | - | Toxin |
| FOV95_RS23340 | 4785664..4786005 | - | 342 | WP_000976476.1 | YebY family protein | - |
| FOV95_RS23345 | 4786018..4786890 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FOV95_RS23350 | 4786894..4787268 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FOV95_RS23355 | 4787406..4787636 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FOV95_RS23360 | 4787738..4788394 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FOV95_RS23365 | 4788418..4789080 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T129142 NZ_CP041749:c4785506-4785403 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT129142 NZ_CP041749:4785365-4785636 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
