Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2795789..2795998 | Replicon | chromosome |
| Accession | NZ_CP041733 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain ME-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2795802..2795905 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2795789..2795998 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FO617_RS13690 | 2792042..2793505 | + | 1464 | WP_144427916.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FO617_RS13695 | 2793612..2793851 | + | 240 | WP_003859885.1 | YebV family protein | - |
| FO617_RS13700 | 2793886..2794530 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| FO617_RS13705 | 2794698..2795678 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| FO617_RS13710 | 2795724..2795921 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2795789..2795998 | + | 210 | - | - | Antitoxin |
| - | 2795802..2795905 | - | 104 | - | - | Toxin |
| FO617_RS13715 | 2796047..2796385 | - | 339 | WP_003859787.1 | YebY family protein | - |
| FO617_RS13720 | 2796402..2797271 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| FO617_RS13725 | 2797273..2797644 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| FO617_RS13730 | 2797782..2798012 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| FO617_RS13735 | 2798124..2798774 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| FO617_RS13740 | 2798799..2799461 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T129072 NZ_CP041733:c2795905-2795802 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT129072 NZ_CP041733:2795789-2795998 [Enterobacter hormaechei subsp. steigerwaltii]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
