Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 2677347..2677870 Replicon chromosome
Accession NZ_CP041690
Organism Youhaiella tibetensis strain fig4

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag FNA67_RS12910 Protein ID WP_147656307.1
Coordinates 2677347..2677622 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag FNA67_RS12915 Protein ID WP_147656308.1
Coordinates 2677622..2677870 (-) Length 83 a.a.

Genomic Context

FNA67_RS12870FNA67_RS12925FNA67_RS12930FNA67_RS12935FNA67_RS12940FNA67_RS12875FNA67_RS12880FNA67_RS12885FNA67_RS12890FNA67_RS12895FNA67_RS12900FNA67_RS12905FNA67_RS12910FNA67_RS12915FNA67_RS12920
Location: 2672466..2672723 (258 bp)
Type: Others
Protein ID: WP_147656301.1
Location: 2678773..2679234 (462 bp)
Type: Others
Protein ID: WP_147656310.1
Location: 2679316..2680305 (990 bp)
Type: Others
Protein ID: WP_147656311.1
Location: 2680302..2681600 (1299 bp)
Type: Others
Protein ID: WP_147656312.1
Location: 2681597..2682196 (600 bp)
Type: Others
Protein ID: WP_049705564.1
Location: 2672773..2672997 (225 bp)
Type: Others
Protein ID: WP_082202452.1
Location: 2673205..2673972 (768 bp)
Type: Others
Protein ID: WP_147656302.1
Location: 2673966..2675450 (1485 bp)
Type: Others
Protein ID: WP_147656303.1
Location: 2675447..2675923 (477 bp)
Type: Others
Protein ID: WP_147656304.1
Location: 2675944..2676426 (483 bp)
Type: Others
Protein ID: WP_147656305.1
Location: 2676432..2676719 (288 bp)
Type: Others
Protein ID: WP_049705559.1
Location: 2676811..2677350 (540 bp)
Type: Others
Protein ID: WP_147656306.1
Location: 2677347..2677622 (276 bp)
Type: Toxin
Protein ID: WP_147656307.1
Location: 2677622..2677870 (249 bp)
Type: Antitoxin
Protein ID: WP_147656308.1
Location: 2677945..2678403 (459 bp)
Type: Others
Protein ID: WP_170267307.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FNA67_RS128702672466..2672723+258WP_147656301.1YjhX family toxin-
FNA67_RS128752672773..2672997-225WP_082202452.1hypothetical protein-
FNA67_RS128802673205..2673972-768WP_147656302.1pentapeptide repeat-containing protein-
FNA67_RS128852673966..2675450-1485WP_147656303.1Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA-
FNA67_RS128902675447..2675923-477WP_147656304.1hypothetical protein-
FNA67_RS128952675944..2676426-483WP_147656305.1GNAT family N-acetyltransferase-
FNA67_RS129002676432..2676719-288WP_049705559.1Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC-
FNA67_RS129052676811..2677350-540WP_147656306.1hypothetical protein-
FNA67_RS129102677347..2677622-276WP_147656307.1type II toxin-antitoxin system RelE/ParE family toxinToxin
FNA67_RS129152677622..2677870-249WP_147656308.1ribbon-helix-helix domain-containing proteinAntitoxin
FNA67_RS129202677945..2678403-459WP_170267307.1DUF2442 domain-containing protein-
FNA67_RS129252678773..2679234+462WP_147656310.1Holliday junction resolvase RuvX-
FNA67_RS129302679316..2680305+990WP_147656311.1aspartate carbamoyltransferase catalytic subunit-
FNA67_RS129352680302..2681600+1299WP_147656312.1dihydroorotase-
FNA67_RS129402681597..2682196+600WP_049705564.1glycerol-3-phosphate 1-O-acyltransferase PlsY-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(6-42)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10644.34 Da        Isoelectric Point: 10.8246

>T128992 WP_147656307.1 NZ_CP041690:c2677622-2677347 [Youhaiella tibetensis]
MRLRWTSAAQGDLARLHEFLKTDSPGAAARVVQMLVAAPEQLLKAPRLGQRLEEFSPREVRRIIVGRYEMRYEVADQAVF
ILRIWHTREDR

Download         Length: 276 bp

>T128992 NZ_CP041690:c2677622-2677347 [Youhaiella tibetensis]
ATGCGTCTGCGGTGGACTTCTGCCGCTCAGGGTGACCTCGCTCGGCTCCACGAGTTTCTTAAGACTGACAGTCCCGGCGC
TGCTGCAAGGGTGGTCCAAATGCTGGTGGCAGCACCCGAGCAGTTGCTCAAGGCACCGCGCCTCGGCCAACGTCTCGAGG
AATTTTCACCCAGGGAGGTTCGCCGCATTATCGTTGGGCGCTATGAAATGCGCTACGAGGTCGCCGATCAAGCGGTCTTT
ATTCTGCGCATCTGGCACACACGGGAAGATCGATGA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9230.36 Da        Isoelectric Point: 4.6742

>AT128992 WP_147656308.1 NZ_CP041690:c2677870-2677622 [Youhaiella tibetensis]
MSTRVLTAHVPEELAERVDQLAARLERSRGWIVKQALTDWVALEDERRHLTLEALADVDEGRLVEHDSMVSWAAGLGEGP
NR

Download         Length: 249 bp

>AT128992 NZ_CP041690:c2677870-2677622 [Youhaiella tibetensis]
ATGAGCACTCGTGTCCTTACAGCCCATGTTCCTGAAGAGCTCGCTGAGCGGGTGGACCAACTGGCCGCGCGGCTGGAGCG
GTCGAGGGGCTGGATCGTCAAACAGGCTTTGACCGATTGGGTGGCGCTCGAGGATGAGCGCAGGCACCTCACGCTCGAGG
CGCTCGCCGATGTCGATGAGGGGCGCCTTGTCGAGCATGACAGCATGGTGTCATGGGCGGCGGGGCTCGGCGAGGGCCCC
AATCGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References