Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2086378..2086649 | Replicon | chromosome |
| Accession | NZ_CP041678 | ||
| Organism | Escherichia coli strain ESBL 15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2086508..2086611 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2086378..2086649 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOA56_RS10310 | 2082933..2083595 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FOA56_RS10315 | 2083619..2084275 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FOA56_RS10320 | 2084377..2084607 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FOA56_RS10325 | 2084746..2085120 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FOA56_RS10330 | 2085124..2085996 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| FOA56_RS10335 | 2086009..2086350 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2086378..2086649 | - | 272 | - | - | Antitoxin |
| - | 2086508..2086611 | + | 104 | - | - | Toxin |
| FOA56_RS10340 | 2086746..2087401 | + | 656 | Protein_1971 | protein-serine/threonine phosphatase | - |
| FOA56_RS10345 | 2087402..2087593 | - | 192 | WP_000457842.1 | YebW family protein | - |
| FOA56_RS10350 | 2087698..2087934 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FOA56_RS10355 | 2088052..2089491 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128969 NZ_CP041678:2086508-2086611 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT128969 NZ_CP041678:c2086649-2086378 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
