Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 258069..258613 Replicon chromosome
Accession NZ_CP041661
Organism Catenovulum sediminis strain WS1-A

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag FNT16_RS18530 Protein ID WP_143873332.1
Coordinates 258341..258613 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag FNT16_RS18525 Protein ID WP_143873330.1
Coordinates 258069..258341 (+) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FNT16_RS18505 253420..254094 - 675 WP_143873322.1 RNA polymerase sigma factor -
FNT16_RS18510 254508..255698 + 1191 WP_143873324.1 hypothetical protein -
FNT16_RS18515 255743..257056 - 1314 WP_143873326.1 RICIN domain-containing protein -
FNT16_RS18520 257416..257904 - 489 WP_143873328.1 hypothetical protein -
FNT16_RS18525 258069..258341 + 273 WP_143873330.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
FNT16_RS18530 258341..258613 + 273 WP_143873332.1 type II toxin-antitoxin system YafQ family toxin Toxin
FNT16_RS18535 258670..258915 + 246 Protein_189 phage integrase N-terminal SAM-like domain-containing protein -
FNT16_RS20470 258844..259041 - 198 WP_185976820.1 hypothetical protein -
FNT16_RS18540 259086..259544 + 459 WP_143873896.1 transposase -
FNT16_RS18545 259945..260355 - 411 WP_143873334.1 hypothetical protein -
FNT16_RS18550 260465..260869 - 405 WP_143873336.1 hypothetical protein -
FNT16_RS18555 261221..262379 + 1159 Protein_194 IS3 family transposase -
FNT16_RS18560 262441..263205 - 765 WP_143873338.1 hydratase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10394.08 Da        Isoelectric Point: 8.0614

>T128957 WP_143873332.1 NZ_CP041661:258341-258613 [Catenovulum sediminis]
MLALEYSTQFKKDFKKIAKLPIPDVVEVGHVIKQLQLGKELPEKYLDHALSGNWQGYRDCHVKPDLVLIYKSEDESLKLA
RIGSHSELFR

Download         Length: 273 bp

>T128957 NZ_CP041661:258341-258613 [Catenovulum sediminis]
ATGTTAGCTCTAGAATACTCGACGCAATTCAAAAAAGACTTTAAAAAAATAGCCAAACTACCAATCCCTGATGTGGTAGA
GGTTGGTCATGTCATTAAACAGTTACAACTTGGCAAAGAACTACCAGAAAAATATTTAGATCACGCGCTTTCTGGAAATT
GGCAAGGCTATCGCGATTGTCACGTTAAGCCTGATTTAGTTTTGATTTATAAATCAGAAGACGAGAGCCTGAAATTAGCC
CGAATTGGAAGTCATAGCGAGTTGTTCCGGTAG

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 9821.14 Da        Isoelectric Point: 4.7769

>AT128957 WP_143873330.1 NZ_CP041661:258069-258341 [Catenovulum sediminis]
MKTEMLSTRIDHDTKVAFTNVCENMGLSTSQALKLFAKAVINHGGIPFELKAKTPNALTTAAIEELESGNGNKAKNVEQL
FNDLDIDNIE

Download         Length: 273 bp

>AT128957 NZ_CP041661:258069-258341 [Catenovulum sediminis]
ATGAAGACTGAAATGTTAAGTACCCGAATAGACCATGATACCAAGGTAGCATTTACTAACGTTTGTGAGAATATGGGGCT
AAGCACCTCCCAGGCACTAAAGCTATTCGCTAAAGCTGTGATTAATCACGGGGGTATACCGTTTGAACTTAAAGCCAAGA
CGCCAAACGCTTTGACCACTGCCGCAATCGAAGAATTGGAGTCTGGAAACGGAAATAAAGCTAAAAATGTAGAGCAGCTC
TTTAACGATTTAGATATTGACAATATAGAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References