Detailed information of TA system TA128956

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RelE(toxin)
• Location: 36724..37283
• Replicon: chromosome
• Accession: NZ_CP041661
• Organism: Catenovulum sediminis strain WS1-A

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: FNT16_RS17790
• Protein ID: WP_143873082.1
• Coordinates: 36724..37002 (-)
• Length: 93 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: FNT16_RS17795
• Protein ID: WP_143873084.1
• Coordinates: 36999..37283 (-)
• Length: 95 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FNT16_RS17770	32459..34150	-	1692	WP_143873875.1	Na+:solute symporter	-
FNT16_RS17775	34170..35495	-	1326	WP_143873077.1	family 16 glycosylhydrolase	-
FNT16_RS17780	35770..36063	-	294	WP_143873079.1	type II toxin-antitoxin system RelE/ParE family toxin	-
FNT16_RS17785	36063..36302	-	240	WP_143873080.1	type II toxin-antitoxin system ParD family antitoxin	-
FNT16_RS17790	36724..37002	-	279	WP_143873082.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
FNT16_RS17795	36999..37283	-	285	WP_143873084.1	damage-inducible protein J	Antitoxin
FNT16_RS17800	37357..38499	-	1143	WP_143873877.1	serine hydrolase	-
FNT16_RS17805	38755..40026	+	1272	WP_143873085.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
FNT16_RS17810	40096..41094	-	999	WP_143873087.1	aldo/keto reductase	-
FNT16_RS17815	41126..41959	-	834	WP_143873089.1	amidohydrolase family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (2-89)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 93 a.a.
• Molecular weight: 11099.70 Da
• Isoelectric Point: 4.2692

>T128956 WP_143873082.1 NZ_CP041661:c37002-36724 [Catenovulum sediminis]
MIFWEEESLNDREKIFEFLFDFNPDVAEKTDQIIESKVENLIEQPLMDVQRDSFRGHILIIPEVSMIVSYWIDGETIRIM
RVLHQKQKFPQD

Nucleotide

• Length: 279 bp

>T128956 NZ_CP041661:c37002-36724 [Catenovulum sediminis]
ATGATCTTTTGGGAAGAAGAGTCACTAAATGATCGCGAAAAGATATTTGAATTTTTATTTGATTTTAACCCAGACGTGGC
AGAAAAAACCGATCAAATAATTGAGTCTAAAGTTGAAAACCTTATTGAGCAGCCCTTAATGGACGTTCAAAGAGATAGTT
TTAGAGGACACATATTAATAATCCCTGAAGTATCAATGATAGTTTCATATTGGATTGATGGTGAAACCATTCGTATTATG
CGGGTTTTACACCAGAAGCAGAAATTTCCACAAGATTAA

Antitoxin

Protein

• Length: 95 a.a.
• Molecular weight: 10970.36 Da
• Isoelectric Point: 8.0481

>AT128956 WP_143873084.1 NZ_CP041661:c37283-36999 [Catenovulum sediminis]
MDTRIQFRVDEETKRLAQLMAESQGRTLSDACRELTVGLAEEQRKKMAHDLWLTEQINAAFEKFDSGKANFIEHNEAKSQ
MDARKNKIRNRDKT

Nucleotide

• Length: 285 bp

>AT128956 NZ_CP041661:c37283-36999 [Catenovulum sediminis]
ATGGACACTCGCATACAATTTAGAGTTGATGAAGAAACTAAACGGTTAGCACAGTTAATGGCAGAAAGCCAAGGACGGAC
ATTAAGTGATGCATGCAGAGAGCTCACTGTAGGCTTAGCGGAAGAACAACGAAAAAAAATGGCTCATGACTTGTGGTTAA
CAGAACAAATAAATGCTGCATTTGAAAAATTTGATAGCGGCAAAGCTAACTTTATTGAGCATAATGAAGCAAAATCTCAG
ATGGATGCTAGAAAGAATAAGATCCGTAATAGAGATAAAACATGA