Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 35770..36302 Replicon chromosome
Accession NZ_CP041661
Organism Catenovulum sediminis strain WS1-A

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag FNT16_RS17780 Protein ID WP_143873079.1
Coordinates 35770..36063 (-) Length 98 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag FNT16_RS17785 Protein ID WP_143873080.1
Coordinates 36063..36302 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FNT16_RS17765 31240..32472 - 1233 WP_143873075.1 family 43 glycosylhydrolase -
FNT16_RS17770 32459..34150 - 1692 WP_143873875.1 Na+:solute symporter -
FNT16_RS17775 34170..35495 - 1326 WP_143873077.1 family 16 glycosylhydrolase -
FNT16_RS17780 35770..36063 - 294 WP_143873079.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
FNT16_RS17785 36063..36302 - 240 WP_143873080.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
FNT16_RS17790 36724..37002 - 279 WP_143873082.1 type II toxin-antitoxin system RelE/ParE family toxin -
FNT16_RS17795 36999..37283 - 285 WP_143873084.1 damage-inducible protein J -
FNT16_RS17800 37357..38499 - 1143 WP_143873877.1 serine hydrolase -
FNT16_RS17805 38755..40026 + 1272 WP_143873085.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
FNT16_RS17810 40096..41094 - 999 WP_143873087.1 aldo/keto reductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Antitoxin ParD

(1-77)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11375.16 Da        Isoelectric Point: 10.1495

>T128955 WP_143873079.1 NZ_CP041661:c36063-35770 [Catenovulum sediminis]
MSKFELSGKAKNDLINIAKYTQLTWGISQRNDYLKQLDNTFRQLASEPMLGVSCDYIKEGYRKRPQGSHVIYYKEHKTNQ
ILIVRILHKSMDINRAL

Download         Length: 294 bp

>T128955 NZ_CP041661:c36063-35770 [Catenovulum sediminis]
ATGTCGAAATTCGAATTATCAGGAAAAGCCAAAAACGATTTAATTAACATAGCCAAATATACTCAATTAACTTGGGGAAT
ATCGCAAAGGAATGATTATTTAAAACAGTTAGACAATACTTTCCGTCAACTAGCCAGCGAACCTATGCTAGGGGTTAGTT
GCGATTATATTAAAGAAGGTTACAGAAAACGCCCTCAAGGTAGCCACGTAATATATTATAAAGAGCATAAAACTAACCAA
ATTTTAATTGTAAGAATATTACATAAAAGTATGGATATTAACCGCGCGCTCTGA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 8878.84 Da        Isoelectric Point: 4.7628

>AT128955 WP_143873080.1 NZ_CP041661:c36302-36063 [Catenovulum sediminis]
MVKNTSVTLGEHFDHFINQQVKSGRYGSASEVVRAGLRALEDQETKLMNLRNMLVEGENSGVADYSYDSLISELDKDNR

Download         Length: 240 bp

>AT128955 NZ_CP041661:c36302-36063 [Catenovulum sediminis]
ATGGTTAAGAATACAAGCGTAACATTAGGCGAGCATTTCGATCATTTTATAAATCAGCAAGTTAAATCAGGTCGTTATGG
CTCAGCAAGTGAAGTAGTGCGTGCAGGCTTAAGAGCGCTAGAAGATCAGGAAACAAAGCTAATGAATTTACGCAATATGC
TAGTTGAAGGTGAAAACAGTGGAGTTGCAGATTACTCGTATGATTCTTTGATTTCAGAGCTGGACAAAGATAACCGCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References