Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) CapRel-ATcapRel/-
Location 2222..2784 Replicon chromosome
Accession NZ_CP041647
Organism Rhodococcus hoagii strain WY

Toxin (Protein)


Gene name capRel Uniprot ID -
Locus tag FNU77_RS00395 Protein ID WP_143524957.1
Coordinates 2473..2784 (-) Length 104 a.a.

Antitoxin (Protein)


Gene name ATcapRel Uniprot ID -
Locus tag FNU77_RS00390 Protein ID WP_143524956.1
Coordinates 2222..2464 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FNU77_RS00385 1266..1805 + 540 WP_143524815.1 hypothetical protein -
FNU77_RS24350 1987..2136 - 150 WP_175280139.1 hypothetical protein -
FNU77_RS00390 2222..2464 - 243 WP_143524956.1 hypothetical protein Antitoxin
FNU77_RS00395 2473..2784 - 312 WP_143524957.1 RelA/SpoT domain-containing protein Toxin
FNU77_RS00400 2742..3218 - 477 WP_143524816.1 RelA/SpoT domain-containing protein -
FNU77_RS00405 3497..3775 - 279 WP_143524817.1 hypothetical protein -
FNU77_RS00410 3772..3978 - 207 WP_143524818.1 transcriptional regulator -
FNU77_RS00415 5065..5553 + 489 WP_143524819.1 hypothetical protein -
FNU77_RS00420 6410..7324 + 915 WP_175280140.1 Lsr2 family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RelA/SpoT

(1-36)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 11651.22 Da        Isoelectric Point: 7.4010

>T128940 WP_143524957.1 NZ_CP041647:c2784-2473 [Rhodococcus hoagii]
IAEPKESGYRGVHVISEYRGRLIEVQLRTRTMHEWAYMVEKVTTQIGHDVKSGRGPAKVHDWFQAVSEAMALEEQGLTVD
GTLAKRIVELRSEAEPYLRGGRS

Download         Length: 312 bp

>T128940 NZ_CP041647:c2784-2473 [Rhodococcus hoagii]
ATCGCTGAGCCGAAGGAATCGGGATACCGTGGAGTGCACGTGATTAGCGAGTACCGCGGACGGCTGATCGAGGTTCAGCT
GCGTACCCGAACCATGCACGAGTGGGCCTACATGGTCGAGAAGGTGACCACTCAAATCGGTCACGACGTAAAGTCCGGCA
GAGGGCCAGCGAAGGTTCACGACTGGTTCCAGGCTGTGTCCGAAGCGATGGCCCTTGAGGAGCAGGGCTTGACAGTGGAT
GGCACACTAGCAAAGAGAATCGTTGAGCTTCGGTCAGAAGCAGAGCCATATTTGAGGGGAGGCCGCTCTTGA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9029.06 Da        Isoelectric Point: 4.4763

>AT128940 WP_143524956.1 NZ_CP041647:c2464-2222 [Rhodococcus hoagii]
IKHFLLVFDHSRAELVDLQEFEEDTRAAMAAYAEKEREHLNNGDSIEIVLIGSDSLETIKLTHANYFDGTVAVSRYFAGV

Download         Length: 243 bp

>AT128940 NZ_CP041647:c2464-2222 [Rhodococcus hoagii]
ATCAAGCACTTCCTCCTGGTGTTCGACCACTCCCGCGCGGAGTTGGTTGACCTGCAGGAATTCGAGGAAGACACGCGGGC
AGCGATGGCCGCTTACGCCGAGAAGGAGCGGGAGCACCTCAACAATGGCGACTCGATCGAGATCGTGCTGATCGGCTCCG
ACTCTCTGGAAACGATCAAGCTCACCCACGCGAACTACTTCGATGGCACCGTAGCCGTATCGCGGTACTTCGCCGGCGTC
TAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References