Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3497215..3497360 | Replicon | chromosome |
| Accession | NZ_CP041644 | ||
| Organism | Klebsiella pneumoniae strain NKU_Kleb8A7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3497251..3497353 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3497215..3497360 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOA47_RS16880 | 3492345..3494405 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FOA47_RS16885 | 3494409..3495068 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FOA47_RS16890 | 3495147..3495377 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FOA47_RS16895 | 3495490..3495864 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FOA47_RS16900 | 3495868..3496737 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| FOA47_RS16905 | 3496754..3497092 | + | 339 | WP_004189269.1 | YebY family protein | - |
| - | 3497215..3497360 | - | 146 | - | - | Antitoxin |
| - | 3497251..3497353 | + | 103 | - | - | Toxin |
| FOA47_RS16915 | 3497727..3497870 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FOA47_RS16920 | 3497975..3498943 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FOA47_RS16925 | 3499100..3499753 | + | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| FOA47_RS16930 | 3499750..3499941 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FOA47_RS16935 | 3500039..3500278 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FOA47_RS16940 | 3500394..3501827 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T128929 NZ_CP041644:3497251-3497353 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT128929 NZ_CP041644:c3497360-3497215 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
