Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 978808..979079 | Replicon | chromosome |
| Accession | NZ_CP041628 | ||
| Organism | Escherichia coli strain PE15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 978846..978949 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 978808..979079 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNZ59_RS04745 | 975965..977404 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FNZ59_RS04750 | 977522..977758 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| FNZ59_RS04755 | 977863..978054 | + | 192 | WP_001338167.1 | YebW family protein | - |
| FNZ59_RS04760 | 978055..978711 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 978808..979079 | + | 272 | - | - | Antitoxin |
| - | 978846..978949 | - | 104 | - | - | Toxin |
| FNZ59_RS04765 | 979107..979448 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FNZ59_RS04770 | 979461..980333 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| FNZ59_RS04775 | 980337..980711 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FNZ59_RS04780 | 980850..981080 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FNZ59_RS04785 | 981182..981838 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FNZ59_RS04790 | 981862..982524 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128870 NZ_CP041628:c978949-978846 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT128870 NZ_CP041628:978808-979079 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
