Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 162534..162802 | Replicon | chromosome |
| Accession | NZ_CP041620 | ||
| Organism | Shigella flexneri strain C32 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 162662..162764 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 162534..162802 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNL95_RS01545 | 159087..159749 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| FNL95_RS01550 | 159773..160429 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| FNL95_RS01555 | 160531..160761 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FNL95_RS01560 | 160900..161274 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FNL95_RS01565 | 161278..162150 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| FNL95_RS01570 | 162163..162504 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 162534..162802 | - | 269 | - | - | Antitoxin |
| - | 162662..162764 | + | 103 | - | - | Toxin |
| FNL95_RS01575 | 162899..163555 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| FNL95_RS01580 | 163556..163747 | - | 192 | WP_024186842.1 | YebW family protein | - |
| FNL95_RS01585 | 163852..164088 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FNL95_RS01590 | 164207..165646 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T128771 NZ_CP041620:162662-162764 [Shigella flexneri]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT128771 NZ_CP041620:c162802-162534 [Shigella flexneri]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
