Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3574388..3574556 | Replicon | chromosome |
| Accession | NZ_CP041515 | ||
| Organism | Klebsiella michiganensis strain KNU07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3574395..3574498 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3574388..3574556 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNA74_RS18555 | 3569662..3570180 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| FNA74_RS18560 | 3570199..3570963 | + | 765 | WP_049102470.1 | molecular chaperone | - |
| FNA74_RS18565 | 3570966..3573296 | + | 2331 | WP_047723554.1 | fimbria/pilus outer membrane usher protein | - |
| FNA74_RS18570 | 3573311..3574270 | + | 960 | WP_046878049.1 | spore coat U domain-containing protein | - |
| - | 3574388..3574556 | + | 169 | - | - | Antitoxin |
| - | 3574395..3574498 | - | 104 | - | - | Toxin |
| FNA74_RS18575 | 3574655..3574993 | - | 339 | WP_064375491.1 | YebY family protein | - |
| FNA74_RS18580 | 3575010..3575879 | - | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| FNA74_RS18585 | 3575884..3576258 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| FNA74_RS18590 | 3576394..3576624 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| FNA74_RS18595 | 3576703..3577362 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| FNA74_RS18600 | 3577369..3579429 | - | 2061 | WP_033836507.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128737 NZ_CP041515:c3574498-3574395 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT128737 NZ_CP041515:3574388-3574556 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
