Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 134982..135216 | Replicon | chromosome |
| Accession | NZ_CP041513 | ||
| Organism | Shigella boydii strain KCCM 41690 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 134983..135086 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 134982..135216 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNA65_RS01540 | 131886..132583 | + | 698 | Protein_146 | IS1 family transposase | - |
| FNA65_RS01545 | 132866..133063 | + | 198 | Protein_147 | metallophosphoesterase | - |
| FNA65_RS01555 | 134381..134851 | + | 471 | WP_071821702.1 | tyrosine-type recombinase/integrase | - |
| - | 134982..135216 | + | 235 | - | - | Antitoxin |
| - | 134983..135086 | - | 104 | - | - | Toxin |
| FNA65_RS01560 | 135244..135585 | - | 342 | WP_000976477.1 | YebY family protein | - |
| FNA65_RS01565 | 135598..136470 | - | 873 | WP_000879299.1 | copper homeostasis membrane protein CopD | - |
| FNA65_RS01570 | 136474..136848 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FNA65_RS01575 | 136987..137217 | + | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| FNA65_RS01580 | 137319..137975 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FNA65_RS01585 | 137999..138661 | + | 663 | WP_000944259.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | ipaH9.8 | 126120..135585 | 9465 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128711 NZ_CP041513:c135086-134983 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT128711 NZ_CP041513:134982-135216 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
