Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2018762..2019033 | Replicon | chromosome |
| Accession | NZ_CP041452 | ||
| Organism | Escherichia coli strain YPE3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2018892..2018995 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2018762..2019033 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNP78_RS10485 | 2015317..2015979 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| FNP78_RS10490 | 2016003..2016659 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FNP78_RS10495 | 2016761..2016991 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FNP78_RS10500 | 2017130..2017504 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FNP78_RS10505 | 2017508..2018380 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| FNP78_RS10510 | 2018393..2018734 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2018762..2019033 | - | 272 | - | - | Antitoxin |
| - | 2018892..2018995 | + | 104 | - | - | Toxin |
| FNP78_RS10515 | 2019130..2019786 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| FNP78_RS10520 | 2019787..2019978 | - | 192 | WP_001338167.1 | YebW family protein | - |
| FNP78_RS10525 | 2020083..2020319 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| FNP78_RS10530 | 2020437..2021876 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128674 NZ_CP041452:2018892-2018995 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT128674 NZ_CP041452:c2019033-2018762 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
