Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2710561..2710832 | Replicon | chromosome |
| Accession | NZ_CP041431 | ||
| Organism | Escherichia coli strain STEC316 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2710599..2710702 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2710561..2710832 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNE83_RS13520 | 2707718..2709157 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FNE83_RS13525 | 2709275..2709511 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FNE83_RS13530 | 2709616..2709807 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FNE83_RS13535 | 2709808..2710464 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2710561..2710832 | + | 272 | - | - | Antitoxin |
| - | 2710599..2710702 | - | 104 | - | - | Toxin |
| FNE83_RS13540 | 2710860..2711201 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FNE83_RS13545 | 2711214..2712086 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| FNE83_RS13550 | 2712090..2712464 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FNE83_RS13555 | 2712603..2712833 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FNE83_RS13560 | 2712935..2713591 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FNE83_RS13565 | 2713615..2714277 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128492 NZ_CP041431:c2710702-2710599 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT128492 NZ_CP041431:2710561-2710832 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
