Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4619289..4619560 | Replicon | chromosome |
| Accession | NZ_CP041429 | ||
| Organism | Escherichia coli strain STEC367 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4619327..4619430 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4619289..4619560 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNE84_RS22455 | 4616446..4617885 | + | 1440 | WP_161623843.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FNE84_RS22460 | 4618003..4618239 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FNE84_RS22465 | 4618344..4618535 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FNE84_RS22470 | 4618536..4619192 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 4619289..4619560 | + | 272 | - | - | Antitoxin |
| - | 4619327..4619430 | - | 104 | - | - | Toxin |
| FNE84_RS22475 | 4619588..4619929 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FNE84_RS22480 | 4619942..4620814 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| FNE84_RS22485 | 4620818..4621192 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FNE84_RS22490 | 4621331..4621561 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FNE84_RS22495 | 4621663..4622319 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FNE84_RS22500 | 4622343..4623005 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128463 NZ_CP041429:c4619430-4619327 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT128463 NZ_CP041429:4619289-4619560 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
