Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3110609..3110880 | Replicon | chromosome |
| Accession | NZ_CP041422 | ||
| Organism | Escherichia coli strain STEC409 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3110647..3110750 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3110609..3110880 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNE86_RS15310 | 3107766..3109205 | + | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FNE86_RS15315 | 3109323..3109559 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FNE86_RS15320 | 3109664..3109855 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FNE86_RS15325 | 3109856..3110512 | - | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| - | 3110609..3110880 | + | 272 | - | - | Antitoxin |
| - | 3110647..3110750 | - | 104 | - | - | Toxin |
| FNE86_RS15330 | 3110908..3111249 | - | 342 | WP_000976476.1 | YebY family protein | - |
| FNE86_RS15335 | 3111262..3112134 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| FNE86_RS15340 | 3112138..3112512 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FNE86_RS15345 | 3112651..3112881 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FNE86_RS15350 | 3112983..3113639 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| FNE86_RS15355 | 3113663..3114325 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128392 NZ_CP041422:c3110750-3110647 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT128392 NZ_CP041422:3110609-3110880 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
