Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 780882..781680 | Replicon | chromosome |
| Accession | NZ_CP041411 | ||
| Organism | Escherichia coli strain STEC719 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | FNE88_RS03765 | Protein ID | WP_061356740.1 |
| Coordinates | 780882..781259 (-) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A0A1M1EW42 |
| Locus tag | FNE88_RS03770 | Protein ID | WP_032153712.1 |
| Coordinates | 781306..781680 (-) | Length | 125 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNE88_RS03730 | 776457..777635 | + | 1179 | WP_000094971.1 | type II secretion system protein GspL | - |
| FNE88_RS03735 | 777637..778173 | + | 537 | WP_161622375.1 | GspM family type II secretion system protein YghD | - |
| FNE88_RS03740 | 778579..778905 | - | 327 | WP_021537629.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FNE88_RS03745 | 778902..779165 | - | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| FNE88_RS03750 | 779237..780103 | - | 867 | WP_032153714.1 | DUF4942 domain-containing protein | - |
| FNE88_RS03755 | 780188..780385 | - | 198 | WP_000839265.1 | DUF957 domain-containing protein | - |
| FNE88_RS03760 | 780397..780885 | - | 489 | WP_061356741.1 | hypothetical protein | - |
| FNE88_RS03765 | 780882..781259 | - | 378 | WP_061356740.1 | TA system toxin CbtA family protein | Toxin |
| FNE88_RS03770 | 781306..781680 | - | 375 | WP_032153712.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin |
| FNE88_RS03775 | 781760..781981 | - | 222 | WP_000692353.1 | DUF987 domain-containing protein | - |
| FNE88_RS03780 | 782050..782526 | - | 477 | WP_078214997.1 | RadC family protein | - |
| FNE88_RS03785 | 782542..783027 | - | 486 | WP_061356738.1 | antirestriction protein | - |
| FNE88_RS03790 | 783119..783937 | - | 819 | WP_001234621.1 | DUF945 domain-containing protein | - |
| FNE88_RS03795 | 784036..784269 | - | 234 | WP_001278287.1 | DUF905 family protein | - |
| FNE88_RS03800 | 784275..784952 | - | 678 | WP_001097305.1 | hypothetical protein | - |
| FNE88_RS03805 | 785100..785780 | - | 681 | WP_001282919.1 | WYL domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | iroB | 778902..811529 | 32627 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14149.13 Da Isoelectric Point: 7.8045
>T128312 WP_061356740.1 NZ_CP041411:c781259-780882 [Escherichia coli]
MKTLPDTHVREASRCPSPVTIWQTLLTRLLDQHYDLTLNDTPFADERVIEQHIEAGISLCDTVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMARDNYRTVNNITLGKHPGAKQ
MKTLPDTHVREASRCPSPVTIWQTLLTRLLDQHYDLTLNDTPFADERVIEQHIEAGISLCDTVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMARDNYRTVNNITLGKHPGAKQ
Download Length: 378 bp
>T128312 NZ_CP041411:c781259-780882 [Escherichia coli]
ATGAAAACATTACCTGACACACACGTACGGGAGGCATCGCGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGTTGGACCAGCATTACGACCTCACACTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGCGATACGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCAGGATTC
AGCGCCTGTACCCGTTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCCCGCCGGGCAACCGGCCTGATGGCCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
ATGAAAACATTACCTGACACACACGTACGGGAGGCATCGCGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGTTGGACCAGCATTACGACCTCACACTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGCGATACGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCAGGATTC
AGCGCCTGTACCCGTTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCCCGCCGGGCAACCGGCCTGATGGCCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
Antitoxin
Download Length: 125 a.a. Molecular weight: 13697.51 Da Isoelectric Point: 6.6240
>AT128312 WP_032153712.1 NZ_CP041411:c781680-781306 [Escherichia coli]
VSDTLPGTTHPDDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLSSCGYVYMAVYPTLAPATTS
VSDTLPGTTHPDDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLSSCGYVYMAVYPTLAPATTS
Download Length: 375 bp
>AT128312 NZ_CP041411:c781680-781306 [Escherichia coli]
GTGTCAGACACTCTCCCCGGGACAACGCATCCCGACGATAACAACGACCGCCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTTGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCAGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATGCGTACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTG
TGGTTACGTTTATATGGCTGTTTATCCGACACTGGCACCCGCAACCACCTCATAA
GTGTCAGACACTCTCCCCGGGACAACGCATCCCGACGATAACAACGACCGCCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTTGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCAGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATGCGTACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTG
TGGTTACGTTTATATGGCTGTTTATCCGACACTGGCACCCGCAACCACCTCATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|