Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 2517797..2518486 Replicon chromosome
Accession NZ_CP041387
Organism Rhodopseudomonas palustris strain GJ-22

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag FLL57_RS11480 Protein ID WP_047308695.1
Coordinates 2518064..2518486 (+) Length 141 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag FLL57_RS11475 Protein ID WP_142882949.1
Coordinates 2517797..2518051 (+) Length 85 a.a.

Genomic Context

FLL57_RS11470FLL57_RS11475FLL57_RS11480FLL57_RS11490FLL57_RS11495FLL57_RS11455FLL57_RS11460FLL57_RS11465FLL57_RS11485
Location: 2516625..2517305 (681 bp)
Type: Others
Protein ID: WP_142882948.1
Location: 2517797..2518051 (255 bp)
Type: Antitoxin
Protein ID: WP_142882949.1
Location: 2518064..2518486 (423 bp)
Type: Toxin
Protein ID: WP_047308695.1
Location: 2519687..2520661 (975 bp)
Type: Others
Protein ID: WP_142882951.1
Location: 2520875..2521552 (678 bp)
Type: Others
Protein ID: WP_142882952.1
Location: 2513121..2513909 (789 bp)
Type: Others
Protein ID: WP_142882946.1
Location: 2513928..2514317 (390 bp)
Type: Others
Protein ID: WP_052960643.1
Location: 2514460..2515815 (1356 bp)
Type: Others
Protein ID: WP_142882947.1
Location: 2518648..2519223 (576 bp)
Type: Others
Protein ID: WP_142882950.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FLL57_RS114552513121..2513909-789WP_142882946.1ATPase-
FLL57_RS114602513928..2514317-390WP_052960643.1hypothetical protein-
FLL57_RS114652514460..2515815-1356WP_142882947.1RluA family pseudouridine synthase-
FLL57_RS114702516625..2517305+681WP_142882948.1hypothetical protein-
FLL57_RS114752517797..2518051+255WP_142882949.1plasmid stabilization proteinAntitoxin
FLL57_RS114802518064..2518486+423WP_047308695.1type II toxin-antitoxin system VapC family toxinToxin
FLL57_RS114852518648..2519223-576WP_142882950.1HXXEE domain-containing protein-
FLL57_RS114902519687..2520661+975WP_142882951.1DUF4892 domain-containing protein-
FLL57_RS114952520875..2521552+678WP_142882952.1nitroreductase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-123)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 141 a.a.        Molecular weight: 14812.84 Da        Isoelectric Point: 4.8187

>T128267 WP_047308695.1 NZ_CP041387:2518064-2518486 [Rhodopseudomonas palustris]
MIVLDTNVVSEAMTREPHPRVREWLNAQSAETLFLSSITVAELLFGVSVLPAGKRKNALGAALDDVLDVFATRILPFDTP
AAQRYADLAVKARAAGKGFPTPDGYIAAIATAHGFAVASRDASAFDAAGLTVIDPWTTND

Download         Length: 423 bp

>T128267 NZ_CP041387:2518064-2518486 [Rhodopseudomonas palustris]
ATGATCGTGCTGGACACCAACGTCGTCTCCGAAGCGATGACGCGCGAACCGCATCCGCGGGTGCGCGAATGGCTCAATGC
TCAGTCCGCCGAGACTTTGTTCCTGTCCAGCATCACCGTCGCCGAACTTCTGTTCGGCGTTAGCGTCTTGCCGGCCGGAA
AGCGTAAGAACGCCTTGGGCGCTGCGCTCGACGATGTGTTGGACGTGTTTGCCACCCGCATCCTGCCGTTCGATACCCCG
GCTGCGCAGCGCTATGCCGATCTCGCCGTCAAGGCGCGCGCGGCCGGCAAGGGCTTCCCCACGCCCGACGGCTACATCGC
CGCGATCGCCACCGCGCACGGGTTCGCTGTCGCGTCGCGCGACGCGAGTGCGTTCGACGCCGCCGGTCTGACCGTGATCG
ATCCCTGGACCACAAATGACTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9435.86 Da        Isoelectric Point: 8.6794

>AT128267 WP_142882949.1 NZ_CP041387:2517797-2518051 [Rhodopseudomonas palustris]
MVAVTIRNLSEEAHRALKVRAAQHNRSAEAEMRAILEAAVRPEGRLLLGTALQEIGQKYDITNADIEAIEQVRDKRPAKP
MKFE

Download         Length: 255 bp

>AT128267 NZ_CP041387:2517797-2518051 [Rhodopseudomonas palustris]
ATGGTCGCCGTCACCATTCGCAACCTCTCCGAGGAGGCGCATCGCGCCCTGAAGGTCCGCGCGGCGCAGCATAATCGCAG
CGCGGAAGCGGAGATGCGCGCCATTCTGGAAGCCGCGGTCCGCCCCGAGGGCCGCTTGCTGCTCGGCACGGCTTTGCAGG
AGATCGGGCAGAAATACGACATCACCAATGCTGATATCGAAGCCATCGAACAGGTCCGAGACAAGCGTCCTGCCAAGCCG
ATGAAGTTTGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References