Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 1975389..1976023 Replicon chromosome
Accession NZ_CP041387
Organism Rhodopseudomonas palustris strain GJ-22

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag FLL57_RS08995 Protein ID WP_013502482.1
Coordinates 1975389..1975769 (-) Length 127 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag FLL57_RS09000 Protein ID WP_013502481.1
Coordinates 1975769..1976023 (-) Length 85 a.a.

Genomic Context

FLL57_RS08955FLL57_RS08960FLL57_RS08965FLL57_RS08970FLL57_RS08975FLL57_RS08985FLL57_RS09005FLL57_RS09010FLL57_RS09015FLL57_RS09020FLL57_RS09025FLL57_RS08980FLL57_RS08990FLL57_RS08995FLL57_RS09000
Location: 1970841..1971359 (519 bp)
Type: Others
Protein ID: WP_013502490.1
Location: 1971575..1971802 (228 bp)
Type: Others
Protein ID: WP_013502489.1
Location: 1971819..1972034 (216 bp)
Type: Others
Protein ID: WP_013502488.1
Location: 1972050..1972622 (573 bp)
Type: Others
Protein ID: WP_013502487.1
Location: 1972704..1973105 (402 bp)
Type: Others
Protein ID: WP_047307936.1
Location: 1974449..1974655 (207 bp)
Type: Others
Protein ID: WP_013502484.1
Location: 1976273..1977571 (1299 bp)
Type: Others
Protein ID: WP_142882702.1
Location: 1977717..1978199 (483 bp)
Type: Others
Protein ID: WP_013502479.1
Location: 1978196..1979365 (1170 bp)
Type: Others
Protein ID: WP_142882703.1
Location: 1979376..1979984 (609 bp)
Type: Others
Protein ID: WP_142882704.1
Location: 1980200..1980691 (492 bp)
Type: Others
Protein ID: WP_013502476.1
Location: 1973297..1974175 (879 bp)
Type: Others
Protein ID: WP_013502485.1
Location: 1974841..1975206 (366 bp)
Type: Others
Protein ID: WP_013502483.1
Location: 1975389..1975769 (381 bp)
Type: Toxin
Protein ID: WP_013502482.1
Location: 1975769..1976023 (255 bp)
Type: Antitoxin
Protein ID: WP_013502481.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FLL57_RS089551970841..1971359+519WP_013502490.1MarR family winged helix-turn-helix transcriptional regulator-
FLL57_RS089601971575..1971802+228WP_013502489.1hypothetical protein-
FLL57_RS089651971819..1972034+216WP_013502488.1hypothetical protein-
FLL57_RS089701972050..1972622+573WP_013502487.1DUF4142 domain-containing protein-
FLL57_RS089751972704..1973105+402WP_047307936.1group III truncated hemoglobin-
FLL57_RS089801973297..1974175-879WP_013502485.1glutathione-dependent disulfide-bond oxidoreductase-
FLL57_RS089851974449..1974655+207WP_013502484.1hypothetical protein-
FLL57_RS089901974841..1975206-366WP_013502483.1cupin domain-containing protein-
FLL57_RS089951975389..1975769-381WP_013502482.1type II toxin-antitoxin system VapC family toxinToxin
FLL57_RS090001975769..1976023-255WP_013502481.1type II toxin-antitoxin system VapB family antitoxinAntitoxin
FLL57_RS090051976273..1977571+1299WP_142882702.1serine hydroxymethyltransferase-
FLL57_RS090101977717..1978199+483WP_013502479.1transcriptional regulator NrdR-
FLL57_RS090151978196..1979365+1170WP_142882703.1bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD-
FLL57_RS090201979376..1979984+609WP_142882704.1riboflavin synthase-
FLL57_RS090251980200..1980691+492WP_013502476.16,7-dimethyl-8-ribityllumazine synthase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-124)

Antitoxin

Antitoxin VapB-like

(1-83)


Sequences

Toxin        


Download         Length: 127 a.a.        Molecular weight: 13603.59 Da        Isoelectric Point: 4.4420

>T128266 WP_013502482.1 NZ_CP041387:c1975769-1975389 [Rhodopseudomonas palustris]
MVIDTSVIVAIALDEPDAAALEARIADDPVRLISAATVLEATIVLETKLGDAGGREFDLWLLKIGAEIVPVDAEQMEAAR
RAWRRTGKGRHAADLNYGDCFAHALAITRGEPLLYKGEDFAKMEIG

Download         Length: 381 bp

>T128266 NZ_CP041387:c1975769-1975389 [Rhodopseudomonas palustris]
ATGGTGATCGACACCTCCGTTATCGTGGCGATCGCGCTCGACGAGCCCGATGCCGCGGCGCTCGAGGCGCGGATCGCCGA
CGATCCGGTCCGCCTGATCTCCGCCGCCACCGTGCTCGAAGCGACGATCGTACTGGAGACGAAACTCGGCGATGCCGGCG
GACGCGAGTTCGACCTCTGGCTGCTCAAGATCGGCGCCGAGATCGTCCCGGTCGACGCCGAGCAGATGGAGGCCGCGCGC
CGCGCCTGGCGCCGCACCGGCAAAGGCCGCCACGCCGCCGACCTGAACTACGGCGACTGCTTCGCCCACGCCCTCGCGAT
CACGCGCGGCGAGCCGCTGCTTTACAAGGGCGAGGATTTTGCGAAGATGGAGATCGGTTAG

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9665.92 Da        Isoelectric Point: 8.7898

>AT128266 WP_013502481.1 NZ_CP041387:c1976023-1975769 [Rhodopseudomonas palustris]
MALSIKDPETERLARHLAQATGETITQATRRALEERLRRVGGQSRRAELLEDMAAIRQRWRAMPVRDDRTADEIVGYDEH
GLPR

Download         Length: 255 bp

>AT128266 NZ_CP041387:c1976023-1975769 [Rhodopseudomonas palustris]
ATGGCGTTGAGCATCAAGGACCCTGAGACCGAGCGGCTGGCGCGCCATCTCGCGCAAGCGACCGGCGAAACCATCACCCA
GGCGACCAGGCGCGCGCTGGAAGAGCGGCTACGCCGGGTCGGCGGACAATCCCGCCGCGCCGAGCTGCTGGAGGACATGG
CGGCGATCCGCCAGCGCTGGCGCGCGATGCCGGTCCGCGACGACCGGACCGCGGACGAGATCGTCGGCTACGACGAGCAC
GGCTTGCCGCGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References