Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 1311309..1311979 Replicon chromosome
Accession NZ_CP041387
Organism Rhodopseudomonas palustris strain GJ-22

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag FLL57_RS05940 Protein ID WP_142882389.1
Coordinates 1311309..1311719 (-) Length 137 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag FLL57_RS05945 Protein ID WP_041807975.1
Coordinates 1311716..1311979 (-) Length 88 a.a.

Genomic Context

FLL57_RS05920FLL57_RS05925FLL57_RS05930FLL57_RS05950FLL57_RS05935FLL57_RS05940FLL57_RS05945FLL57_RS05955FLL57_RS05960FLL57_RS05965
Location: 1306889..1308277 (1389 bp)
Type: Others
Protein ID: WP_011157539.1
Location: 1308408..1308761 (354 bp)
Type: Others
Protein ID: WP_142882386.1
Location: 1308808..1310565 (1758 bp)
Type: Others
Protein ID: WP_142882387.1
Location: 1312175..1312915 (741 bp)
Type: Others
Protein ID: WP_041807408.1
Location: 1310590..1311165 (576 bp)
Type: Others
Protein ID: WP_142882388.1
Location: 1311309..1311719 (411 bp)
Type: Toxin
Protein ID: WP_142882389.1
Location: 1311716..1311979 (264 bp)
Type: Antitoxin
Protein ID: WP_041807975.1
Location: 1312940..1314274 (1335 bp)
Type: Others
Protein ID: WP_013503199.1
Location: 1314372..1315523 (1152 bp)
Type: Others
Protein ID: WP_013503198.1
Location: 1315712..1316020 (309 bp)
Type: Others
Protein ID: WP_142882390.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FLL57_RS059201306889..1308277+1389WP_011157539.13-deoxy-7-phosphoheptulonate synthase class II-
FLL57_RS059251308408..1308761+354WP_142882386.1diacylglycerol kinase-
FLL57_RS059301308808..1310565+1758WP_142882387.1NAD+ synthase-
FLL57_RS059351310590..1311165-576WP_142882388.1hypothetical protein-
FLL57_RS059401311309..1311719-411WP_142882389.1type II toxin-antitoxin system VapC family toxinToxin
FLL57_RS059451311716..1311979-264WP_041807975.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
FLL57_RS059501312175..1312915+741WP_041807408.1helix-turn-helix transcriptional regulator-
FLL57_RS059551312940..1314274-1335WP_013503199.1FAD-dependent oxidoreductase-
FLL57_RS059601314372..1315523-1152WP_013503198.1DUF2865 domain-containing protein-
FLL57_RS059651315712..1316020-309WP_142882390.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideIntegrative and Conjugative Element--1072466..1320120247654


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-124)

Antitoxin

SpoVT-AbrB domain

(9-55)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 15163.55 Da        Isoelectric Point: 5.6944

>T128264 WP_142882389.1 NZ_CP041387:c1311719-1311309 [Rhodopseudomonas palustris]
MSGWMLDTNVASHVIRGDKREIIERLVALPISDVVISSITEAELLYGLAKRGYPTALSERVREFLLRVDVLPWDHEVTKT
YAELRAACEAKGVTLSPLDMMIAAHAAATDAKLVTRDKAFSRVPSPLRIEDWAEMN

Download         Length: 411 bp

>T128264 NZ_CP041387:c1311719-1311309 [Rhodopseudomonas palustris]
ATGAGCGGCTGGATGCTGGATACCAATGTCGCCAGCCATGTCATCAGAGGCGATAAGCGCGAGATCATCGAGCGACTGGT
CGCGCTGCCCATCTCGGACGTCGTGATCTCGTCGATCACCGAAGCCGAACTCCTCTACGGCCTCGCTAAGCGAGGCTATC
CCACTGCGCTGTCCGAACGGGTTCGCGAATTCCTGCTCCGAGTCGACGTCCTGCCCTGGGATCACGAGGTGACCAAGACC
TACGCCGAGCTACGCGCCGCCTGCGAAGCCAAAGGCGTCACGCTCTCTCCTCTCGACATGATGATCGCAGCTCATGCTGC
CGCGACAGACGCGAAGCTAGTGACGCGAGACAAGGCTTTCAGCCGCGTGCCTTCGCCCTTACGGATCGAGGATTGGGCGG
AGATGAATTGA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9951.10 Da        Isoelectric Point: 5.1283

>AT128264 WP_041807975.1 NZ_CP041387:c1311979-1311716 [Rhodopseudomonas palustris]
MTSRTAKIFTTGRSQAVRLPAEFRFEGSEVFVRRDQKTGDVILSRKPDSWDGLLELHKTTAVPDDFMGPPDRTQPPQDRD
PFEGWTE

Download         Length: 264 bp

>AT128264 NZ_CP041387:c1311979-1311716 [Rhodopseudomonas palustris]
ATGACGTCCCGAACCGCCAAGATTTTCACGACCGGCCGCAGCCAGGCCGTCAGGCTCCCCGCGGAGTTTCGCTTCGAAGG
CAGCGAGGTTTTCGTGCGCCGCGACCAGAAGACGGGTGATGTCATCCTGTCCCGCAAGCCGGACTCCTGGGACGGTCTGC
TGGAGCTCCACAAGACAACAGCAGTGCCTGACGACTTCATGGGGCCGCCCGACCGCACCCAGCCGCCGCAGGATCGCGAT
CCGTTCGAAGGCTGGACCGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
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Antitoxin

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Source
ID
Structure
No matching records found

References