Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2724615..2724762 | Replicon | chromosome |
| Accession | NZ_CP041362 | ||
| Organism | Citrobacter amalonaticus strain 133355-SW-C4-Cam | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2724619..2724722 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2724615..2724762 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEO47_RS12925 | 2721619..2723160 | + | 1542 | WP_185957627.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FEO47_RS12930 | 2723275..2723511 | + | 237 | WP_161215572.1 | DUF1480 family protein | - |
| FEO47_RS12935 | 2723614..2723805 | + | 192 | WP_043000391.1 | YebW family protein | - |
| FEO47_RS12940 | 2723806..2724468 | - | 663 | WP_043000390.1 | protein-serine/threonine phosphatase | - |
| - | 2724615..2724762 | + | 148 | - | - | Antitoxin |
| - | 2724619..2724722 | - | 104 | - | - | Toxin |
| FEO47_RS12945 | 2724878..2725216 | - | 339 | WP_043000379.1 | YebY family protein | - |
| FEO47_RS12950 | 2725233..2726105 | - | 873 | WP_142765192.1 | copper homeostasis membrane protein CopD | - |
| FEO47_RS12955 | 2726108..2726482 | - | 375 | WP_142765193.1 | CopC domain-containing protein YobA | - |
| FEO47_RS12960 | 2726620..2726850 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| FEO47_RS12965 | 2726959..2727597 | + | 639 | WP_142765194.1 | carbon-nitrogen hydrolase family protein | - |
| FEO47_RS12970 | 2727645..2728307 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128214 NZ_CP041362:c2724722-2724619 [Citrobacter amalonaticus]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT128214 NZ_CP041362:2724615-2724762 [Citrobacter amalonaticus]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
