Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RHH(antitoxin) |
Location | 148039..148544 | Replicon | chromosome |
Accession | NZ_CP041354 | ||
Organism | Pseudomonas aeruginosa strain AZPAE15042 |
Toxin (Protein)
Gene name | parE | Uniprot ID | A0A3S0LZE8 |
Locus tag | IHMA87_RS00680 | Protein ID | WP_003156094.1 |
Coordinates | 148039..148320 (-) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | A0A4P0TKN5 |
Locus tag | IHMA87_RS00685 | Protein ID | WP_034081045.1 |
Coordinates | 148317..148544 (-) | Length | 76 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
IHMA87_RS00655 | 143298..144647 | + | 1350 | WP_023443219.1 | C4-dicarboxylate transporter DctA | - |
IHMA87_RS00660 | 144695..145381 | + | 687 | WP_011979163.1 | FadR family transcriptional regulator | - |
IHMA87_RS00665 | 145482..146216 | + | 735 | WP_011979164.1 | GntR family transcriptional regulator | - |
IHMA87_RS00670 | 146383..146784 | + | 402 | WP_052151110.1 | aegerolysin family protein | - |
IHMA87_RS00675 | 146851..147741 | - | 891 | WP_034081046.1 | LysR family transcriptional regulator | - |
IHMA87_RS00680 | 148039..148320 | - | 282 | WP_003156094.1 | type II toxin-antitoxin system toxin ParE | Toxin |
IHMA87_RS00685 | 148317..148544 | - | 228 | WP_034081045.1 | CopG family ribbon-helix-helix protein | Antitoxin |
IHMA87_RS00690 | 148720..149340 | - | 621 | WP_034081043.1 | hypothetical protein | - |
IHMA87_RS00695 | 149441..149941 | + | 501 | WP_034081042.1 | LEA type 2 family protein | - |
IHMA87_RS00700 | 150014..150355 | + | 342 | WP_003101229.1 | alkylphosphonate utilization protein | - |
IHMA87_RS00705 | 150475..151902 | - | 1428 | WP_034081041.1 | GABA permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10433.15 Da Isoelectric Point: 9.6558
>T128154 WP_003156094.1 NZ_CP041354:c148320-148039 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQEVANQGAGRPSEVPGVRTLALERWPFSAPFRVKGKE
IQILRIDRVEITP
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQEVANQGAGRPSEVPGVRTLALERWPFSAPFRVKGKE
IQILRIDRVEITP
Download Length: 282 bp
>T128154 NZ_CP041354:c148320-148039 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACTCGCAAGGCGGCCGCCGACCTGGACGCCATCTATGACCACTACGTGGTGCTGATCGGCCCGGA
GAAAGCGCTGAAAGCCGTCCAGGACATCGTCGAGCAGGTGAAACCGCTACAGGAGGTGGCCAACCAGGGCGCGGGGCGAC
CCAGCGAGGTGCCAGGCGTACGCACCCTGGCGCTGGAGCGCTGGCCGTTCAGCGCCCCATTTCGGGTAAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA
ATGAGCCTGAAGTGGACTCGCAAGGCGGCCGCCGACCTGGACGCCATCTATGACCACTACGTGGTGCTGATCGGCCCGGA
GAAAGCGCTGAAAGCCGTCCAGGACATCGTCGAGCAGGTGAAACCGCTACAGGAGGTGGCCAACCAGGGCGCGGGGCGAC
CCAGCGAGGTGCCAGGCGTACGCACCCTGGCGCTGGAGCGCTGGCCGTTCAGCGCCCCATTTCGGGTAAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8568.64 Da Isoelectric Point: 5.5740
>AT128154 WP_034081045.1 NZ_CP041354:c148544-148317 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHLEIEKRWGLQ
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHLEIEKRWGLQ
Download Length: 228 bp
>AT128154 NZ_CP041354:c148544-148317 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGATGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGGGA
CCGTCCGTACCACTTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCC
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACCTCGAGATCGAGAAGCGCTGGGGGCTGCAATGA
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGATGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGGGA
CCGTCCGTACCACTTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCC
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACCTCGAGATCGAGAAGCGCTGGGGGCTGCAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A3S0LZE8 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A4P0TKN5 |