Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 4766493..4767147 Replicon chromosome
Accession NZ_CP041337
Organism Escherichia coli strain CCUG 73778

Toxin (Protein)


Gene name cptA Uniprot ID F4T2L4
Locus tag FMA85_RS23185 Protein ID WP_000244765.1
Coordinates 4766740..4767147 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID F4T2L5
Locus tag FMA85_RS23180 Protein ID WP_000354050.1
Coordinates 4766493..4766759 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FMA85_RS23160 4762581..4764014 - 1434 WP_001296350.1 6-phospho-beta-glucosidase BglA -
FMA85_RS23165 4764059..4764370 + 312 WP_001182956.1 N(4)-acetylcytidine aminohydrolase -
FMA85_RS23170 4764534..4765193 + 660 WP_000250275.1 hemolysin III family protein -
FMA85_RS23175 4765270..4766250 - 981 WP_000886084.1 tRNA-modifying protein YgfZ -
FMA85_RS23180 4766493..4766759 + 267 WP_000354050.1 FAD assembly factor SdhE Antitoxin
FMA85_RS23185 4766740..4767147 + 408 WP_000244765.1 protein YgfX Toxin
FMA85_RS23190 4767187..4767708 - 522 WP_001055874.1 flavodoxin FldB -
FMA85_RS23195 4767820..4768716 + 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
FMA85_RS23200 4768741..4769451 + 711 WP_000715230.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
FMA85_RS23205 4769457..4771190 + 1734 WP_000813195.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16043.95 Da        Isoelectric Point: 11.5202

>T128077 WP_000244765.1 NZ_CP041337:4766740-4767147 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLIPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDSGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

>T128077 NZ_CP041337:4766740-4767147 [Escherichia coli]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATTCCCTGGCCGCTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGCATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCGCCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGACAGCGGAAAACGGCA
ACATTTATGGCTGGCAGCTGACAGCATGGACGAAGCCGAATGGCGGGATTTACGGCGGATATTGTTGCAACAAGAGACGC
AAAGATAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10535.07 Da        Isoelectric Point: 5.1599

>AT128077 WP_000354050.1 NZ_CP041337:4766493-4766759 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRTFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT128077 NZ_CP041337:4766493-4766759 [Escherichia coli]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCACCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCAGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A454A7D7

Antitoxin

Source ID Structure
AlphaFold DB A0A061L3F4

References