Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 930762..931030 | Replicon | chromosome |
| Accession | NZ_CP041337 | ||
| Organism | Escherichia coli strain CCUG 73778 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 930890..930992 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 930762..931030 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FMA85_RS04390 | 927315..927977 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FMA85_RS04395 | 928001..928657 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| FMA85_RS04400 | 928759..928989 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FMA85_RS04405 | 929128..929502 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FMA85_RS04410 | 929506..930378 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| FMA85_RS04415 | 930391..930732 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 930762..931030 | - | 269 | - | - | Antitoxin |
| - | 930890..930992 | + | 103 | - | - | Toxin |
| FMA85_RS04420 | 931127..931783 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| FMA85_RS04425 | 931784..931975 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FMA85_RS04430 | 932080..932316 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FMA85_RS04435 | 932433..933872 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T128054 NZ_CP041337:930890-930992 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT128054 NZ_CP041337:c931030-930762 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
