Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2172223..2172491 | Replicon | chromosome |
| Accession | NZ_CP041304 | ||
| Organism | Escherichia coli strain MSHS 133 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2172351..2172453 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2172223..2172491 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FK544_RS11585 | 2168776..2169438 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FK544_RS11590 | 2169462..2170118 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein | - |
| FK544_RS11595 | 2170220..2170450 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| FK544_RS11600 | 2170589..2170963 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FK544_RS11605 | 2170967..2171839 | + | 873 | WP_141841220.1 | copper homeostasis membrane protein CopD | - |
| FK544_RS11610 | 2171852..2172193 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2172223..2172491 | - | 269 | - | - | Antitoxin |
| - | 2172351..2172453 | + | 103 | - | - | Toxin |
| FK544_RS11615 | 2172588..2173244 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| FK544_RS11620 | 2173245..2173436 | - | 192 | WP_001317886.1 | YebW family protein | - |
| FK544_RS11625 | 2173541..2173777 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FK544_RS11630 | 2173895..2175334 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T128024 NZ_CP041304:2172351-2172453 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT128024 NZ_CP041304:c2172491-2172223 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
