Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2062997..2063268 | Replicon | chromosome |
| Accession | NZ_CP041302 | ||
| Organism | Escherichia coli strain MSHS 472 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2063127..2063230 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2062997..2063268 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FK543_RS11010 | 2059552..2060214 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FK543_RS11015 | 2060238..2060894 | - | 657 | WP_141874711.1 | carbon-nitrogen hydrolase family protein | - |
| FK543_RS11020 | 2060996..2061226 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FK543_RS11025 | 2061365..2061739 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FK543_RS11030 | 2061743..2062615 | + | 873 | Protein_1938 | copper homeostasis membrane protein CopD | - |
| FK543_RS11035 | 2062628..2062969 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2062997..2063268 | - | 272 | - | - | Antitoxin |
| - | 2063127..2063230 | + | 104 | - | - | Toxin |
| FK543_RS11040 | 2063365..2064021 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| FK543_RS11045 | 2064022..2064213 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FK543_RS11050 | 2064318..2064554 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FK543_RS11055 | 2064672..2066111 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T127983 NZ_CP041302:2063127-2063230 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT127983 NZ_CP041302:c2063268-2062997 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
