Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2232130..2232401 | Replicon | chromosome |
| Accession | NZ_CP041300 | ||
| Organism | Escherichia coli O1:H42 strain CLSC36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2232260..2232363 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2232130..2232401 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FK541_RS11695 | 2228685..2229347 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FK541_RS11700 | 2229371..2230027 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| FK541_RS11705 | 2230129..2230359 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FK541_RS11710 | 2230498..2230872 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| FK541_RS11715 | 2230876..2231748 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| FK541_RS11720 | 2231761..2232102 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2232130..2232401 | - | 272 | - | - | Antitoxin |
| - | 2232260..2232363 | + | 104 | - | - | Toxin |
| FK541_RS11725 | 2232498..2233154 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| FK541_RS11730 | 2233155..2233346 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FK541_RS11735 | 2233451..2233687 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FK541_RS11740 | 2233805..2235244 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T127955 NZ_CP041300:2232260-2232363 [Escherichia coli O1:H42]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT127955 NZ_CP041300:c2232401-2232130 [Escherichia coli O1:H42]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
