Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) shpAB/BrnT-BrnA
Location 4582913..4583489 Replicon chromosome
Accession NZ_CP041247
Organism Raoultella electrica strain DSM 102253

Toxin (Protein)


Gene name shpA Uniprot ID -
Locus tag Electrica_RS21920 Protein ID WP_131049471.1
Coordinates 4583202..4583489 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name shpB Uniprot ID -
Locus tag Electrica_RS21915 Protein ID WP_141965380.1
Coordinates 4582913..4583215 (-) Length 101 a.a.

Genomic Context

Electrica_RS21910Electrica_RS21935Electrica_RS21895Electrica_RS21900Electrica_RS21905Electrica_RS21915Electrica_RS21920Electrica_RS21925Electrica_RS21930
Location: 4581360..4582772 (1413 bp)
Type: Others
Protein ID: WP_100684676.1
Location: 4585257..4586039 (783 bp)
Type: Others
Protein ID: WP_141965383.1
Location: 4578884..4579951 (1068 bp)
Type: Others
Protein ID: WP_141965378.1
Location: 4579955..4580419 (465 bp)
Type: Others
Protein ID: WP_141965379.1
Location: 4581018..4581182 (165 bp)
Type: Others
Protein ID: WP_100684675.1
Location: 4582913..4583215 (303 bp)
Type: Antitoxin
Protein ID: WP_141965380.1
Location: 4583202..4583489 (288 bp)
Type: Toxin
Protein ID: WP_131049471.1
Location: 4583824..4584267 (444 bp)
Type: Others
Protein ID: WP_141965381.1
Location: 4584261..4585169 (909 bp)
Type: Others
Protein ID: WP_141965382.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
Electrica_RS218954578884..4579951-1068WP_141965378.1HlyD family secretion protein-
Electrica_RS219004579955..4580419-465WP_141965379.1MarR family transcriptional regulator-
Electrica_RS219054581018..4581182-165WP_100684675.1DUF1127 domain-containing protein-
Electrica_RS219104581360..4582772+1413WP_100684676.1PLP-dependent aminotransferase family protein-
Electrica_RS219154582913..4583215-303WP_141965380.1BrnA antitoxin family proteinAntitoxin
Electrica_RS219204583202..4583489-288WP_131049471.1BrnT family toxinToxin
Electrica_RS219254583824..4584267-444WP_141965381.1FosA family fosfomycin resistance glutathione transferase-
Electrica_RS219304584261..4585169-909WP_141965382.1LysR family transcriptional regulator-
Electrica_RS219354585257..4586039+783WP_141965383.1NAD(P)H-dependent oxidoreductase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(7-88)

Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(37-93)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11135.61 Da        Isoelectric Point: 8.5787

>T127889 WP_131049471.1 NZ_CP041247:c4583489-4583202 [Raoultella electrica]
MPMEFEWDANKAASNLRKHGIRFEEAVLVFDDPQHLSRQDRYQNGEYRWQTLGLVHGIIVILVAHSVRFESGTEVIRIIS
ARKADKKERSRYEHG

Download         Length: 288 bp

>T127889 NZ_CP041247:c4583489-4583202 [Raoultella electrica]
ATGCCAATGGAGTTTGAATGGGATGCAAACAAGGCAGCAAGCAATCTGAGAAAACATGGGATTCGGTTTGAAGAGGCGGT
ACTAGTCTTTGACGATCCGCAGCATCTTTCCCGACAAGATCGCTATCAAAATGGTGAATATCGATGGCAAACCCTCGGCC
TTGTACACGGAATTATCGTTATTCTTGTTGCGCATTCGGTTCGTTTTGAAAGTGGAACGGAGGTCATTCGTATTATCAGC
GCCCGGAAGGCAGATAAGAAAGAGAGGAGTCGTTATGAACATGGTTAA

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11564.11 Da        Isoelectric Point: 9.7962

>AT127889 WP_141965380.1 NZ_CP041247:c4583215-4582913 [Raoultella electrica]
MNMVKHKRDNPAALTAQREDELKALAKKSDDDIDYSDIPSSDDEQWSEAVRGKFYRPLKTQASVRIDADVMAWLKRPGKG
YQTRLNAILREAMLREQNKK

Download         Length: 303 bp

>AT127889 NZ_CP041247:c4583215-4582913 [Raoultella electrica]
ATGAACATGGTTAAACATAAACGCGATAACCCGGCCGCGCTTACCGCCCAGCGTGAAGACGAACTCAAAGCGCTGGCGAA
AAAATCAGATGATGACATTGATTACAGCGACATCCCCTCTTCGGACGATGAGCAGTGGTCAGAGGCGGTTCGCGGTAAAT
TTTATCGGCCGCTAAAAACGCAGGCCTCTGTGCGCATCGATGCTGATGTTATGGCGTGGCTTAAACGCCCGGGAAAAGGT
TATCAAACCCGGCTGAACGCGATTCTGCGGGAAGCCATGCTGCGCGAGCAGAATAAGAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References