Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1974146..1974312 | Replicon | chromosome |
| Accession | NZ_CP041247 | ||
| Organism | Raoultella electrica strain DSM 102253 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1974204..1974307 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1974146..1974312 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Electrica_RS09315 | 1969284..1971344 | + | 2061 | WP_141964340.1 | oligopeptidase B | - |
| Electrica_RS09320 | 1971350..1972009 | - | 660 | WP_131050313.1 | exodeoxyribonuclease X | - |
| Electrica_RS09325 | 1972088..1972318 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| Electrica_RS09330 | 1972445..1972819 | + | 375 | WP_142255865.1 | CopC domain-containing protein YobA | - |
| Electrica_RS09335 | 1972823..1973692 | + | 870 | WP_141964341.1 | copper homeostasis membrane protein CopD | - |
| Electrica_RS09340 | 1973709..1974047 | + | 339 | WP_160704989.1 | YebY family protein | - |
| - | 1974146..1974312 | - | 167 | - | - | Antitoxin |
| - | 1974204..1974307 | + | 104 | - | - | Toxin |
| Electrica_RS09345 | 1974614..1974757 | - | 144 | WP_141964342.1 | Ecr family regulatory small membrane protein | - |
| Electrica_RS09350 | 1974879..1975850 | - | 972 | WP_208764247.1 | DUF535 family protein | - |
| Electrica_RS09355 | 1975994..1976647 | + | 654 | WP_131047781.1 | protein-serine/threonine phosphatase | - |
| Electrica_RS09360 | 1976644..1976835 | - | 192 | WP_100682323.1 | YebW family protein | - |
| Electrica_RS09365 | 1976928..1977167 | - | 240 | WP_100682324.1 | YebV family protein | - |
| Electrica_RS09370 | 1977282..1978715 | - | 1434 | WP_141964344.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T127877 NZ_CP041247:1974204-1974307 [Raoultella electrica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT127877 NZ_CP041247:c1974312-1974146 [Raoultella electrica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
