Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN_Sll0205-like-Phd
Location 3143616..3144220 Replicon chromosome
Accession NZ_CP041207
Organism Mycobacterium tuberculosis strain MT-0080

Toxin (Protein)


Gene name vapC Uniprot ID P71623
Locus tag FKO20_RS15465 Protein ID WP_003414492.1
Coordinates 3143616..3144008 (-) Length 131 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A829CBY8
Locus tag FKO20_RS15470 Protein ID WP_003414495.1
Coordinates 3144005..3144220 (-) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FKO20_RS15435 3138766..3139554 - 789 WP_003917092.1 CRISPR-associated endoribonuclease Cas6 -
FKO20_RS15440 3139888..3140433 - 546 WP_003913758.1 DUF1802 family protein -
FKO20_RS15445 3140705..3141589 - 885 WP_003414409.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
FKO20_RS15450 3141592..3142479 - 888 WP_003414414.1 type IV toxin-antitoxin system AbiEi family antitoxin -
FKO20_RS15455 3142784..3143329 - 546 WP_009939112.1 DUF1802 family protein -
FKO20_RS15460 3143326..3143595 - 270 WP_003912856.1 DUF2277 family protein -
FKO20_RS15465 3143616..3144008 - 393 WP_003414492.1 type II toxin-antitoxin system VapC family toxin Toxin
FKO20_RS15470 3144005..3144220 - 216 WP_003414495.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
FKO20_RS15475 3144267..3145016 + 750 WP_003414497.1 enoyl-CoA hydratase -
FKO20_RS15480 3145095..3146177 - 1083 WP_003414499.1 ABC transporter ATP-binding protein -
FKO20_RS15485 3146170..3147480 - 1311 WP_003414501.1 ABC transporter substrate-binding protein -
FKO20_RS15490 3147483..3148310 - 828 WP_070890403.1 carbohydrate ABC transporter permease -
FKO20_RS15495 3148307..3149218 - 912 WP_003414505.1 sugar ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

VapC-like Sll0205 protein, PIN domain

(5-130)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(2-46)


Sequences

Toxin        


Download         Length: 131 a.a.        Molecular weight: 14610.74 Da        Isoelectric Point: 6.7594

>T127836 WP_003414492.1 NZ_CP041207:c3144008-3143616 [Mycobacterium tuberculosis]
MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLSWLQQLAEHVRTVGITPSV
AATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRSHRHPRPVTVW

Download         Length: 393 bp

>T127836 NZ_CP041207:c3144008-3143616 [Mycobacterium tuberculosis]
ATGACGACGGTGCTGCTCGACTCGCATGTGGCCTACTGGTGGTCGGCCGAGCCGCAGCGTCTCAGCATGGCGGCGAGCCA
GGCCATCGAACACGCCGACGAGCTCGCCGTCGCCGCGATTTCGTGGTTCGAGCTGGCTTGGCTTGCCGAACAGGAACGCA
TCCAACTGGCGATTCCGGTGCTGTCCTGGCTTCAGCAGCTGGCCGAGCACGTTCGCACCGTCGGTATCACGCCCTCGGTC
GCCGCCACGGCGGTGGCGCTGCCCTCGTCGTTCCCCGGCGATCCGGCCGACCGGTTGATCTACGCCACCGCGATCGAACA
CGGCTGGCGGCTGGTGACCAAGGACCGGCGGCTACGCAGTCATCGGCACCCACGACCGGTCACCGTCTGGTAG

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7511.55 Da        Isoelectric Point: 4.9732

>AT127836 WP_003414495.1 NZ_CP041207:c3144220-3144005 [Mycobacterium tuberculosis]
MTATEVKAKILSLLDEVAQGEEIEITKHGRTVARLVAATGPHALKGRFSGVAMAAVDDDELFTTGVSWNVS

Download         Length: 216 bp

>AT127836 NZ_CP041207:c3144220-3144005 [Mycobacterium tuberculosis]
ATGACCGCTACGGAGGTGAAGGCGAAGATCCTCTCCTTGCTTGATGAAGTGGCCCAGGGCGAGGAGATCGAGATCACCAA
ACACGGCCGCACCGTGGCCCGGCTGGTGGCAGCGACGGGGCCGCACGCGCTGAAGGGTCGATTCTCGGGTGTGGCGATGG
CGGCCGTGGATGACGACGAACTCTTCACCACCGGGGTTTCGTGGAACGTTTCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BWM8

Antitoxin

Source ID Structure
AlphaFold DB A0A829CBY8

References