Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2091442..2091586 | Replicon | chromosome |
| Accession | NZ_CP041134 | ||
| Organism | Serratia marcescens strain WVU-010 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2091486..2091582 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2091442..2091586 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FG175_RS10025 | 2086640..2087065 | + | 426 | WP_033653830.1 | RNA polymerase-binding protein DksA | - |
| FG175_RS10030 | 2087260..2088213 | + | 954 | WP_141958825.1 | prolyl aminopeptidase | - |
| FG175_RS10035 | 2088247..2088477 | - | 231 | WP_033638067.1 | DNA polymerase III subunit theta | - |
| FG175_RS10040 | 2088822..2089340 | + | 519 | WP_141958827.1 | non-heme ferritin | - |
| FG175_RS10045 | 2089633..2090049 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| FG175_RS10050 | 2090052..2090933 | + | 882 | WP_126193118.1 | copper homeostasis membrane protein CopD | - |
| FG175_RS10055 | 2091003..2091344 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2091442..2091586 | - | 145 | - | - | Antitoxin |
| - | 2091486..2091582 | + | 97 | - | - | Toxin |
| FG175_RS10060 | 2091661..2092743 | - | 1083 | WP_141958829.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| FG175_RS10065 | 2092718..2092990 | - | 273 | WP_072022390.1 | hypothetical protein | - |
| FG175_RS10070 | 2093066..2093569 | - | 504 | WP_060444327.1 | siphovirus Gp157 family protein | - |
| FG175_RS10075 | 2093566..2095698 | - | 2133 | WP_141958831.1 | hypothetical protein | - |
| FG175_RS10080 | 2095713..2096033 | - | 321 | WP_141958833.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2084830..2173825 | 88995 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T127706 NZ_CP041134:2091486-2091582 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 145 bp
>AT127706 NZ_CP041134:c2091586-2091442 [Serratia marcescens]
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
