Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2091472..2091616 | Replicon | chromosome |
| Accession | NZ_CP041130 | ||
| Organism | Serratia marcescens strain WVU-007 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2091516..2091612 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2091472..2091616 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FG172_RS10025 | 2086670..2087095 | + | 426 | WP_033653830.1 | RNA polymerase-binding protein DksA | - |
| FG172_RS10030 | 2087290..2088243 | + | 954 | WP_141958825.1 | prolyl aminopeptidase | - |
| FG172_RS10035 | 2088277..2088507 | - | 231 | WP_033638067.1 | DNA polymerase III subunit theta | - |
| FG172_RS10040 | 2088852..2089370 | + | 519 | WP_141958827.1 | non-heme ferritin | - |
| FG172_RS10045 | 2089663..2090079 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| FG172_RS10050 | 2090082..2090963 | + | 882 | WP_126193118.1 | copper homeostasis membrane protein CopD | - |
| FG172_RS10055 | 2091033..2091374 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2091472..2091616 | - | 145 | - | - | Antitoxin |
| - | 2091516..2091612 | + | 97 | - | - | Toxin |
| FG172_RS10060 | 2091691..2092773 | - | 1083 | WP_141958829.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| FG172_RS10065 | 2092748..2093020 | - | 273 | WP_072022390.1 | hypothetical protein | - |
| FG172_RS10070 | 2093096..2093599 | - | 504 | WP_060444327.1 | siphovirus Gp157 family protein | - |
| FG172_RS10075 | 2093596..2095728 | - | 2133 | WP_141958831.1 | hypothetical protein | - |
| FG172_RS10080 | 2095743..2096063 | - | 321 | WP_141958833.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2084860..2173855 | 88995 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T127683 NZ_CP041130:2091516-2091612 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 145 bp
>AT127683 NZ_CP041130:c2091616-2091472 [Serratia marcescens]
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
